Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06070 367 / 2e-124 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G31370 334 / 5e-112 bZIP AtbZIP59, PosF21 Basic-leucine zipper (bZIP) transcription factor family protein AT2G40620 178 / 7e-52 bZIP AtbZIP18 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G06850 143 / 9e-40 bZIP ATBZIP52 basic leucine-zipper 52 (.1.2) AT1G43700 140 / 6e-38 bZIP SUE3, AtbZIP51, VIP1 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) AT4G38900 140 / 2e-36 bZIP AtbZIP29 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT2G21230 134 / 2e-34 bZIP AtbZIP30 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT2G42380 72 / 1e-13 bZIP ATBZIP34 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT3G58120 71 / 2e-13 bZIP ATBZIP61 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G12900 68 / 1e-12 bZIP AtbZIP33 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008150 [exp] 447 / 2e-158 AT1G06070 346 / 4e-119 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10018899 [exp] 164 / 9e-47 AT1G43700 287 / 7e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10028595 [exp] 160 / 1e-45 AT1G43700 289 / 1e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10009907 [exp] 160 / 1e-45 AT1G06850 270 / 2e-89 basic leucine-zipper 52 (.1.2) Lus10024204 [exp] 160 / 2e-45 AT1G06850 271 / 5e-90 basic leucine-zipper 52 (.1.2) Lus10042211 [exp] 159 / 1e-44 AT2G40620 277 / 4e-91 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10008605 [exp] 158 / 3e-44 AT2G40620 276 / 1e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10029773 [exp] 148 / 1e-40 AT1G43700 311 / 6e-105 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10042802 [exp] 145 / 1e-39 AT1G43700 313 / 1e-105 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G027400 [exp] 375 / 9e-128 AT1G06070 471 / 2e-165 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.007G130800 [exp] 342 / 8e-115 AT1G06070 392 / 9e-135 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G091400 [exp] 172 / 6e-50 AT2G40620 300 / 2e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.005G190700 [exp] 166 / 1e-47 AT1G43700 219 / 2e-69 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.002G069500 [exp] 162 / 4e-46 AT1G43700 238 / 4e-76 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.019G130000 [exp] 163 / 5e-46 AT2G40620 289 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G156900 [exp] 160 / 7e-45 AT2G40620 291 / 5e-96 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.004G163800 [exp] 151 / 5e-40 AT4G38900 425 / 1e-142 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.009G125400 [exp] 146 / 2e-38 AT4G38900 481 / 1e-164 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.013G124400 [exp] 71 / 2e-13 AT3G58120 293 / 2e-98 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10019376 pacid=23163232 polypeptide=Lus10019376 locus=Lus10019376.g ID=Lus10019376.BGIv1.0 annot-version=v1.0 ATGGCGGGTTACCGCCGGCGTTTTTTTTCCCCGCCGGTTTTTATAGGCGGTCGTTTCCCGAGCTTCTCCCCGCAAGGGAATTCCTACTCTGTCAAACCGG AGCTGCCTTCTTCTCCTACATTTCCGCCGCTTACTAGCTCAGATTCTGGCAGATTCAGTCATGATATCAGCCGAATGTCTGATAACCCACCCAAGAATAT GGGCCACCGCCGAGCCCATTCCGAGATTCTTACCCTCCCTGATGATATCAGCTTCGACAGCGATCTTGGAGTAGTCGGTGCGGATGGCCCTTCTTTCTCT GACGATACTGAAGAAGACATACTCTCTGTGTACCTCAATATGGAGAAGCTGAATTCCTCCTCTGCTACCTCTGGTTTTCAAATTGGGGAGTCGTCTAATC ATTTCTTATCTCCTGCTGACAACAACTGGACTGGCTCTTCGGCACCTATGATGCTGGATGGCGCTTCTGCTCCCACTGAAAGACCTAGAGTTAGGCACCA ACATAGCCAGTCAATGGATGGTTCCAGTTCTATCAAATCGGAGATGCTCATGTCTGCCTCTGAAGATGCTTCTGGTGTTGACTACAAAAAGGCCATTTCT GCTGCTAAACTTGCCGAGCTTGCTCTTGTTGACCCCAAGCGTGCTAAGAGGATATGGGCTAATAGGCAATCAGCAGCAAGATCAAAGGAAAGAAAGATGC GATACATTGCGGAGCTTGAACGGAAAGTGCAGACACTACAAACAGATGCCACATCATTGTCTGCTCAGTTGACTCTTCTGCAGAGGGATACCAATGGCTT AACAGCTGAAAATAGTGAACTGAAGTTGCGCCTACAAACAACAGAGCAGCAGGTCCATCTGCAAGATGCAGCTTCAGGAAAAAAAATACACAGAAAATTT GCCATGGAGTTCATCCATCTGCACCCGAGACCCATACTCCTTGAAATGCTGCTTCATGGTCTGAGCAGTGACTTATCTAGGGCTGGCTGCGTATCTCAGA CAAACCTCAACTTTCTACTTATCGCACACCTNTACTTATCGCCCCCCTGTCCCTCCGTCGTCCAGCTGCAGCTCGCCACTCTAGGTCTCCACCTGCGGCG TATTTGCTTCGAAAACTCTTCCTCATTTCTGCTCGGAACTCCTCAAAATTGCCCTGGTATCTCCGCCTTCAAAGATTGGACTAGAATTGTTGGGCCGCCG ACGGCTTCATTTAACAAATATTACGGATGGTGTCTGAAGATGGCGGTCGACGACCAACGACAGAGGTTGTTGGCGGATGGCGGCTGA
AA sequence Show only first row Show all	>Lus10019376 pacid=23163232 polypeptide=Lus10019376 locus=Lus10019376.g ID=Lus10019376.BGIv1.0 annot-version=v1.0 MAGYRRRFFSPPVFIGGRFPSFSPQGNSYSVKPELPSSPTFPPLTSSDSGRFSHDISRMSDNPPKNMGHRRAHSEILTLPDDISFDSDLGVVGADGPSFS DDTEEDILSVYLNMEKLNSSSATSGFQIGESSNHFLSPADNNWTGSSAPMMLDGASAPTERPRVRHQHSQSMDGSSSIKSEMLMSASEDASGVDYKKAIS AAKLAELALVDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTDATSLSAQLTLLQRDTNGLTAENSELKLRLQTTEQQVHLQDAASGKKIHRKF AMEFIHLHPRPILLEMLLHGLSSDLSRAGCVSQTNLNFLLIAHXYLSPPCPSVVQLQLATLGLHLRRICFENSSSFLLGTPQNCPGISAFKDWTRIVGPP TASFNKYYGWCLKMAVDDQRQRLLADGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06070	bZIP	AtbZIP69	Basic-leucine zipper (bZIP) tr...		Lus10019376 [exp]	0	1
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Lus10042807 [exp]	3.7	0.8690
AT5G18230			transcription regulator NOT2/N...		Lus10002632 [exp]	11.0	0.8573
AT3G15880		WSIP2, TPR4	TOPLESS-RELATED 4, WUS-interac...		Lus10043258 [exp]	12.6	0.8480
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Lus10030142 [exp]	19.4	0.8459
AT5G53480			ARM repeat superfamily protein...		Lus10008863 [exp]	25.3	0.8236
AT3G45190			SIT4 phosphatase-associated fa...		Lus10016088 [exp]	25.5	0.8354
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10042003 [exp]	25.5	0.7970
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Lus10023306 [exp]	28.6	0.7998
AT5G53480			ARM repeat superfamily protein...		Lus10008864 [exp]	28.7	0.8212
AT5G53620			unknown protein		Lus10008846 [exp]	31.9	0.8458

Compare expression of checked genes

Lus10019376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.