Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21990 617 / 0 OEP61, TPR7 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G21640 81 / 5e-16 FKBP42, UCU2, TWD1, ATFKBP42 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G58450 76 / 7e-16 TPR6 tetratricopeptide repeat 6, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48570 79 / 5e-15 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G25230 76 / 2e-14 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT4G30480 67 / 4e-12 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT2G42810 55 / 1e-07 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT1G56090 52 / 5e-07 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G42580 52 / 9e-07 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT3G58620 49 / 1e-05 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036162 [exp] 946 / 0 AT5G64220 818 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10029505 [exp] 81 / 2e-16 AT3G21640 409 / 5e-144 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10039604 [exp] 79 / 2e-15 AT3G21640 327 / 3e-110 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10025888 [exp] 79 / 4e-15 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10002338 [exp] 78 / 1e-14 AT3G25230 874 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10038216 [exp] 77 / 1e-14 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10003171 [exp] 74 / 1e-13 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10035117 [exp] 62 / 2e-10 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 63 / 5e-10 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G190600 [exp] 710 / 0 AT5G21990 693 / 0.0 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G151700 [exp] 689 / 0 AT5G21990 700 / 0.0 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G248300 [exp] 83 / 2e-16 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.005G156250 [exp] 71 / 1e-14 AT5G21990 73 / 2e-16 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G059200 [exp] 75 / 3e-14 AT3G21640 548 / 0.0 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G264400 [exp] 74 / 6e-14 AT3G21640 556 / 0.0 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.014G149400 [exp] 72 / 7e-13 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.006G178900 [exp] 64 / 6e-11 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.006G033400 [exp] 65 / 8e-11 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.018G100700 [exp] 62 / 2e-10 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019379 pacid=23163228 polypeptide=Lus10019379 locus=Lus10019379.g ID=Lus10019379.BGIv1.0 annot-version=v1.0 ATGTTTAACGGGATGATGGATCCTGAGCTGATCAAGCTCGCTCAGGAGCAGATGAGTCGGATATCCCCTGACGAATTGGCCAAGATCCAACAACAGATGA TGTCCAATCCAGATTGGATGAAAATGGCCTCTGAAAGCTTGAAGAACATGAGGCCAGATGACTTGAAACAGGCGGCAGAGCAGTTGAAGTATACACGTCC GGACGAGATGGCTGAGATTGGTGAAAAGATGGCTAATGCATCACCTGAAGAGATAGCTGCTATGCGTGCCCGGCTTGATTCTCAGGTCACTTATGAAATG AATGCTGCTGAAATGTTGAAAAAACAGGGTAATCTGCTTCACAGTGAGGGAAAATACAGCGAGGCATTGCAAAAATATCTGTATGCAAAAAAGAACCTCA AAGGAATTCCATCCTCCAAAGGCAAGGCCCTTTTATTAGCGTGTTCTCTCAATCTAATGTCCTGTTACTTAAAGACAAAACAGTACAACGAGTGCATACA AGAAGGAACAGAGGTGCTAAAATACGAGGCTAAGAACCTCAAAGCTCTTTATCGTAGGGGTCAAGCCTACAAGGAACTTGGACTGTTGCGGGATGCTGTT TCTGATCTGGCAAAAGCACATGAAATGTCACCTGACGATAAGACCGTTGCTTCTGTCTTAAGGAATGCTGAGGAAAGATTGGCTGAAGAGGGTAGTTATC ATGCACCCAAGGGAGTAGTAATTGAAGAGATAACAGAACATGCATCTTCAGAAAATCACGACAGTCCTTCACAGGAAAACATGAATGTTTCAAATACTAA TCTTAGGGGTTCCATGGCCAGTTCAGAGTCTTTACATGCGTTGAAAGACGACCCACAAGCTGTAAGGTTGTGTAAAGCCGTTCGAACTTGTCCAATTCAT GTGATCTTCCCTGTATATATTATATCAGTTACATATAGAAGACTCAAAATGGAATTAGAGTACAAAGGCCTTTGTGTTGTTATGCGAACATTCCAGAATT TTATTTCCAATGCTGATGCTGAAACGTTGTCAGCATTAAGTGGCGGGAAAGCTGGTGATATTTCTCCTGATATGTTTAAAACTGCTACAAATATGATCGG ACAAATGTCTCCCGAGGAGCTCCAGAAAATGCTTCAGATGGCATCTTCTTTTCAGAGGGGAAATCCATTTAGTAATGGCTTTGATAGTATCGGACCTGGT TCTGTTCCTCCAAACATGAGTCCTGACATGATTAAAACCGCTTCTGAAATGATGGGGAAAATGCCCCCAGAAGAGCGTCGAAAGATGTTTGAAATGGCAT TCTCTCTAAGAGGGAAAAGTGCTGTTCCAACAGGAGGAATCTTTGATCAACATGGACTAGATTCGGGCCAAACTTCAAAGCCTGCAGAACCTTGGGAAAA TATTTCTGTAGATGGCAGTAGAAGCGGTGATCCGAGTTCATCTAGCAGCTTGTTTTCAAGGACAATGAGTTCTGATCAATCAAGTTTTTCAAACTCGGCT GGTGATCTGCAGGAACAGTTGAGAAACCAAATGAATGATCCAGCAACACAGCAGATGTTCACTTCAATGATGAAAAACATGAGCCCTGAGATGGTCGCTA ACATGAGCAAGCAGTTTGGAGTTCAGCTTTCTCCAGAAGATGCTGCAAAAGCTCAGCAAGCCATGTCATCTCTTTCTCCAGAGGACTTGGACAAAATGAT GCGATGGATGGATAGGCTCCAAAAAGGAGCTGCAGGTGCAAAGAAGGCAAAGAACTGGTTACTTGGGAAACCTGGTCTGATCATGGCTATATGCATGCTT CTTTTAGCAATGCTACTTCATTGGCTTGGTTTCATCAGAAGGTAA
AA sequence Show only first row Show all	>Lus10019379 pacid=23163228 polypeptide=Lus10019379 locus=Lus10019379.g ID=Lus10019379.BGIv1.0 annot-version=v1.0 MFNGMMDPELIKLAQEQMSRISPDELAKIQQQMMSNPDWMKMASESLKNMRPDDLKQAAEQLKYTRPDEMAEIGEKMANASPEEIAAMRARLDSQVTYEM NAAEMLKKQGNLLHSEGKYSEALQKYLYAKKNLKGIPSSKGKALLLACSLNLMSCYLKTKQYNECIQEGTEVLKYEAKNLKALYRRGQAYKELGLLRDAV SDLAKAHEMSPDDKTVASVLRNAEERLAEEGSYHAPKGVVIEEITEHASSENHDSPSQENMNVSNTNLRGSMASSESLHALKDDPQAVRLCKAVRTCPIH VIFPVYIISVTYRRLKMELEYKGLCVVMRTFQNFISNADAETLSALSGGKAGDISPDMFKTATNMIGQMSPEELQKMLQMASSFQRGNPFSNGFDSIGPG SVPPNMSPDMIKTASEMMGKMPPEERRKMFEMAFSLRGKSAVPTGGIFDQHGLDSGQTSKPAEPWENISVDGSRSGDPSSSSSLFSRTMSSDQSSFSNSA GDLQEQLRNQMNDPATQQMFTSMMKNMSPEMVANMSKQFGVQLSPEDAAKAQQAMSSLSPEDLDKMMRWMDRLQKGAAGAKKAKNWLLGKPGLIMAICML LLAMLLHWLGFIRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21990		OEP61, TPR7	tetratricopeptide repeat 7, ou...		Lus10019379 [exp]	0	1
AT2G39805			Integral membrane Yip1 family ...		Lus10030159 [exp]	3.7	0.7864
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10033368 [exp]	4.6	0.8287
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Lus10016580 [exp]	4.9	0.8155
AT3G20720			unknown protein		Lus10011166 [exp]	6.3	0.8257
AT5G55060			unknown protein		Lus10000118 [exp]	11.8	0.7733
AT2G20010			Protein of unknown function (D...		Lus10034947 [exp]	15.9	0.7813
AT5G25050			Major facilitator superfamily ...		Lus10026893 [exp]	16.7	0.7259
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Lus10036162 [exp]	18.3	0.8140
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10025315 [exp]	20.9	0.7867
AT3G26670			Protein of unknown function (D...		Lus10041504 [exp]	26.5	0.7746

Compare expression of checked genes

Lus10019379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.