Plant FIBer expression Database

Lus10019382 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G44020 116 / 1e-33 thylakoid lumenal P17.1 protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036169
[exp]
157 / 8e-45 AT2G27170 1368 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G155700
[exp]
131 / 2e-39 AT3G44020 143 / 4e-44 thylakoid lumenal P17.1 protein (.1)
PFAM info
Representative CDS sequence
>Lus10019382 pacid=23163223 polypeptide=Lus10019382 locus=Lus10019382.g ID=Lus10019382.BGIv1.0 annot-version=v1.0
ATGGCTGCCCTCTTTGCTTCTTGTTGCTCCTTTCACTACCATTCTTCTGCTCCATCGACGTCGTCTTGCACGTGTAGCAGCAGCAGCAGCAATCATCGAG
TAGAATTGCCATTGAAGAAGTCGAAACTTGTTTCTCCGTCGCCGTGCAGCAAGCGAAGGGTCCTCCCAAAATCAATTAGCAATGTGATTGTAGTCCCGCC
TCTTTTTCTCTTCACAGGGTCATCTCCTCCCAACACTCAGACTGTCTTAGTCGCTGTCAGCGTATTGTCCGCCATTTCCCTCTCTCTCTTCCTCGGCCTC
AAAGGAGATCCAGTGCCGTGTAGCAAATGTGCTGGAAATGGGGGTACGAAATGCGTGTTCTGCGAAAATGGCAAGATGAAGCAAGAAACTGGATTGATGG
ACTGCAGGGTCTGCAAGGGTGCAGGATTGATCCTGTGCAAGAAGTGCGGTGGTTCTGGATATTCTAGACGGCTATGA
AA sequence
>Lus10019382 pacid=23163223 polypeptide=Lus10019382 locus=Lus10019382.g ID=Lus10019382.BGIv1.0 annot-version=v1.0
MAALFASCCSFHYHSSAPSTSSCTCSSSSSNHRVELPLKKSKLVSPSPCSKRRVLPKSISNVIVVPPLFLFTGSSPPNTQTVLVAVSVLSAISLSLFLGL
KGDPVPCSKCAGNGGTKCVFCENGKMKQETGLMDCRVCKGAGLILCKKCGGSGYSRRL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G44020 thylakoid lumenal P17.1 protei... Lus10019382
[exp]
0 1
AT1G32220 NAD(P)-binding Rossmann-fold s... Lus10012126
[exp]
1.4 0.9548
AT1G52240 PIRF1, ATROPGEF... phytochrome interacting RopGEF... Lus10022596
[exp]
1.7 0.9536
AT5G62840 Phosphoglycerate mutase family... Lus10007865
[exp]
1.7 0.9560
AT1G13820 alpha/beta-Hydrolases superfam... Lus10037072
[exp]
2.2 0.9302
AT3G12345 unknown protein Lus10023467
[exp]
4.5 0.9222
AT4G26590 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPT... Lus10022541
[exp]
7.3 0.9105
AT4G31530 NAD(P)-binding Rossmann-fold s... Lus10022420
[exp]
7.9 0.9253
AT1G27520 Glycosyl hydrolase family 47 p... Lus10004233
[exp]
8.7 0.9085
AT5G59400 unknown protein Lus10016531
[exp]
11.0 0.8716
AT2G20260 PSAE-2 photosystem I subunit E-2 (.1) Lus10022846
[exp]
11.3 0.9373

Lus10019382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.