Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20930 647 / 0 TSL TOUSLED, Protein kinase superfamily protein (.1) AT3G13530 111 / 2e-26 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) AT2G45490 106 / 3e-26 ATAUR3 ataurora3 (.1) AT2G25880 106 / 4e-26 ATAUR2 ataurora2 (.1.2) AT4G32830 105 / 1e-25 ATAUR1 ataurora1 (.1) AT3G53930 108 / 2e-25 Protein kinase superfamily protein (.1.2) AT3G07980 106 / 9e-25 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1) AT1G54960 105 / 1e-24 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT1G09000 105 / 2e-24 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT2G17890 102 / 1e-23 CPK16 calcium-dependent protein kinase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036170 [exp] 779 / 0 AT5G20930 753 / 0.0 TOUSLED, Protein kinase superfamily protein (.1) Lus10020580 [exp] 111 / 6e-28 AT2G45490 482 / 3e-174 ataurora3 (.1) Lus10006266 [exp] 106 / 2e-26 AT2G45490 427 / 1e-152 ataurora3 (.1) Lus10029054 [exp] 108 / 8e-26 AT5G58380 483 / 4e-169 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10034212 [exp] 107 / 1e-25 AT5G45820 473 / 5e-166 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10005487 [exp] 104 / 2e-25 AT4G32830 545 / 0.0 ataurora1 (.1) Lus10024448 [exp] 104 / 2e-24 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10007448 [exp] 103 / 3e-24 AT5G25110 650 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10006033 [exp] 100 / 7e-24 AT4G32830 488 / 2e-175 ataurora1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G155400 [exp] 729 / 0 AT5G20930 914 / 0.0 TOUSLED, Protein kinase superfamily protein (.1) Potri.004G193300 [exp] 726 / 0 AT5G20930 886 / 0.0 TOUSLED, Protein kinase superfamily protein (.1) Potri.013G090800 [exp] 118 / 5e-29 AT3G01090 728 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.005G094200 [exp] 115 / 9e-28 AT3G13530 1979 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Potri.006G080500 [exp] 110 / 1e-27 AT2G45490 470 / 2e-169 ataurora3 (.1) Potri.018G057700 [exp] 108 / 7e-27 AT4G32830 544 / 0.0 ataurora1 (.1) Potri.006G235000 [exp] 107 / 1e-26 AT4G32830 553 / 0.0 ataurora1 (.1) Potri.007G070100 [exp] 110 / 4e-26 AT3G13530 1960 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Potri.010G071400 [exp] 104 / 1e-25 AT1G08650 298 / 1e-101 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.008G166500 [exp] 103 / 3e-25 AT1G08650 287 / 2e-97 phosphoenolpyruvate carboxylase kinase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10019383 pacid=23163218 polypeptide=Lus10019383 locus=Lus10019383.g ID=Lus10019383.BGIv1.0 annot-version=v1.0 ATGAGGCATTTATTGGAAACAAAGGAGGCTGTTGATCGCCAACGCAAATCACTGAAGAAACGACAATCTGACAAAGGTGAAGCTGCTGATGCGGAATCTG GAGTGCAGGAAGAGGATCTACTAATCCAGGATGAAATTCTTAAATCTCGTTTGGCAAGCATTAAACGTGAGGAAGAAACTGTCTTACGTGAGAGAGACCG GTATGAGCTAGAAAAGGCTAGGCTGATACGTGAAATGAAACGTATACGAGATGAGGATGGGTCACGCTTCAATAATTTTCAGATATTGAATCACCGATAT GCGCTGTTGAACCTCCTTGGTAAAGGAGGATTTAGTGAGGTTTACAAGGCTTTTGATTTAGTTGAGCACAGATATGTTGCATGTAAACTTCATGGTCTGA ATGCGCAGTGGAGTGAGGATAAGAAGCAAAGTTATGTAAGGCATGCAATACGTGAATATAACATTCACAAGACCCTGGTGCATAATCATATTGTTCGGCT TTGGGATATCTTCGAGATAGATCAGAATACGTTCTGTACAGTCTTGGAGTATTGCAGTGGTAAAGATCTTGATGCGGTTCTTAAAGCAACACCTGTATTG CCTGAAAAGGAAGCCAAGATCATTATTGTTCAAATATTTCTAGGTCTTCTTTACCTGAATAGAAGGGCACAAAAGATCATTCATTATGATCTGAAGCCTG GGAATGTTTTATTCGATGGATTTGGTGCTGCCAAAGTTACTGATTTTGGTCTCAGTAAGATTGTGGAGGACGACGTTGGATCTGAAGGAATGGAACTTAC GTCCCAGGGAGCTGGGACATATTGGTACTTGCCACCAGAATGCTTCGAGCTTAGCAAGACACCTTTAATATCCTCAAAGGTTGATGTATGGTCGGCTGGA ATTCTATTGTATCAAATGCTGTTTGGAAAAAGGCCTTTTGGACATGACCAATCTCAGGAAAAAATATTAAGGGAAGATACAATCATCAAAGCTCGTAGGG TAGAATTTCCTTCCAAACCCGCTGTCTCAAATGAGGCGAAGGAGTTCATCCGACGATGTCTTACATACAACCAAATGGAGAGGCCAGATGTACTGACCAT GGCTCAGGATCCATATCTGACTTACATAAAGAAGTAA
AA sequence Show only first row Show all	>Lus10019383 pacid=23163218 polypeptide=Lus10019383 locus=Lus10019383.g ID=Lus10019383.BGIv1.0 annot-version=v1.0 MRHLLETKEAVDRQRKSLKKRQSDKGEAADAESGVQEEDLLIQDEILKSRLASIKREEETVLRERDRYELEKARLIREMKRIRDEDGSRFNNFQILNHRY ALLNLLGKGGFSEVYKAFDLVEHRYVACKLHGLNAQWSEDKKQSYVRHAIREYNIHKTLVHNHIVRLWDIFEIDQNTFCTVLEYCSGKDLDAVLKATPVL PEKEAKIIIVQIFLGLLYLNRRAQKIIHYDLKPGNVLFDGFGAAKVTDFGLSKIVEDDVGSEGMELTSQGAGTYWYLPPECFELSKTPLISSKVDVWSAG ILLYQMLFGKRPFGHDQSQEKILREDTIIKARRVEFPSKPAVSNEAKEFIRRCLTYNQMERPDVLTMAQDPYLTYIKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Lus10019383 [exp]	0	1
AT1G58025			DNA-binding bromodomain-contai...		Lus10035797 [exp]	4.9	0.6576
AT1G48270		GCR1	G-protein-coupled receptor 1 (...		Lus10017120 [exp]	25.2	0.6305
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10036752 [exp]	91.2	0.5301
AT5G13560			unknown protein		Lus10040337 [exp]	98.9	0.5562
AT5G24260			prolyl oligopeptidase family p...		Lus10018107 [exp]	112.2	0.5452
AT4G39050			Kinesin motor family protein (...		Lus10017893 [exp]	134.9	0.5245
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10026691 [exp]	273.7	0.4888

Compare expression of checked genes

Lus10019383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.