Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04885 204 / 1e-62 Glycosyl hydrolase family protein (.1) AT5G20950 201 / 1e-61 Glycosyl hydrolase family protein (.1.2) AT5G20940 200 / 4e-61 Glycosyl hydrolase family protein (.1) AT3G62710 185 / 2e-55 Glycosyl hydrolase family protein (.1) AT3G47000 172 / 5e-51 Glycosyl hydrolase family protein (.1) AT3G47040 170 / 5e-50 Glycosyl hydrolase family protein (.1.2) AT3G47050 169 / 1e-49 Glycosyl hydrolase family protein (.1.2) AT3G47010 164 / 1e-47 Glycosyl hydrolase family protein (.1.2) AT3G19620 43 / 7e-05 Glycosyl hydrolase family protein (.1) AT1G02640 40 / 0.0006 ATBXL2, BXL2 beta-xylosidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001151 [exp] 303 / 1e-100 AT5G20950 911 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10008432 [exp] 267 / 8e-87 AT5G20950 927 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013390 [exp] 264 / 1e-85 AT5G20950 935 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10023604 [exp] 256 / 5e-82 AT5G20950 822 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10022413 [exp] 243 / 2e-77 AT5G20950 837 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013646 [exp] 237 / 2e-75 AT5G20950 941 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10010657 [exp] 235 / 1e-74 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10010656 [exp] 231 / 8e-73 AT5G20950 897 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10034848 [exp] 225 / 1e-70 AT5G20950 823 / 0.0 Glycosyl hydrolase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G037400 [exp] 251 / 7e-81 AT5G20950 926 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.009G153900 [exp] 250 / 3e-80 AT5G20950 937 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.013G055600 [exp] 244 / 5e-78 AT5G20950 932 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.008G013700 [exp] 242 / 3e-77 AT5G20950 901 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.008G013500 [exp] 228 / 2e-71 AT5G04885 966 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G059200 [exp] 190 / 5e-61 AT5G04885 385 / 8e-131 Glycosyl hydrolase family protein (.1) Potri.009G042800 [exp] 172 / 6e-51 AT3G47000 934 / 0.0 Glycosyl hydrolase family protein (.1) Potri.009G154802 [exp] 149 / 5e-45 AT5G04885 232 / 5e-72 Glycosyl hydrolase family protein (.1) Potri.009G154032 [exp] 130 / 3e-38 AT5G20940 254 / 7e-82 Glycosyl hydrolase family protein (.1) Potri.001G354100 [exp] 43 / 4e-05 AT1G02640 222 / 3e-68 beta-xylosidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019385 pacid=23163241 polypeptide=Lus10019385 locus=Lus10019385.g ID=Lus10019385.BGIv1.0 annot-version=v1.0 ATGACTATTAGAGCTCACCGAAATATCACACGTCCATCAAGAAGTTATCCCTGTAAGTGGGCAGAAGATGATGGTACTACAATCCTGAAAGCAGTGAAAA TTGCAGTTGATCCCTCTACTCAAGTTGTATACAAGGAGAAACCAAATGCTAATTTCATAAAGTCGAACAACTTCTCCTACGCCATTGTGGTGGTTGGTGA GCTTCCGTATGCAGAGACATTCGGTGACAGCTTAAACCTGACTATACCAGCACTTGGACTTAGCACAATCAACAATGTCTGTGGAGCTGTGAAAAGTGTC GTTTTGATCACAGGGCGTCCGGTAGTGATCCAACCACATTACCTTTCCAAGATTGATGCTCTTGTAGCTGCTTGGCTTCCAGGAAGTGAAGGCCAAGGCG TCACTGACCTCTTGTTTGGGGACTTCGGATTCACGGGCAAGCTTGCGAGGATGTGGTTTAAGTCGGTTGACCAACTTCCTATGAATGTGGGTGATTCACA TTATGACCCACTTTTCCCTTTCGGCTTTGGCCTCAACACTCACCCTCTTACATCCTAG
AA sequence Show only first row Show all	>Lus10019385 pacid=23163241 polypeptide=Lus10019385 locus=Lus10019385.g ID=Lus10019385.BGIv1.0 annot-version=v1.0 MTIRAHRNITRPSRSYPCKWAEDDGTTILKAVKIAVDPSTQVVYKEKPNANFIKSNNFSYAIVVVGELPYAETFGDSLNLTIPALGLSTINNVCGAVKSV VLITGRPVVIQPHYLSKIDALVAAWLPGSEGQGVTDLLFGDFGFTGKLARMWFKSVDQLPMNVGDSHYDPLFPFGFGLNTHPLTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04885			Glycosyl hydrolase family prot...		Lus10019385 [exp]	0	1
					Lus10038080 [exp]	2.4	0.9652
AT1G54860			Glycoprotein membrane precurso...		Lus10004470 [exp]	3.3	0.9328
					Lus10036765 [exp]	5.3	0.9641
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10021142 [exp]	6.5	0.9641
AT2G16190			unknown protein		Lus10011284 [exp]	7.5	0.9641
AT3G54200			Late embryogenesis abundant (L...		Lus10031554 [exp]	8.4	0.9641
					Lus10006395 [exp]	9.2	0.9641
AT3G55500		ATHEXPALPHA1.7,...	EXPANSIN 16, expansin A16 (.1)		Lus10014406 [exp]	10.6	0.9491
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Lus10023568 [exp]	10.8	0.9420
					Lus10033211 [exp]	12.0	0.8552

Compare expression of checked genes

Lus10019385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.