Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43600 1497 / 0 AtAO3, atAO-2, AOgamma, AO3, AAO2 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) AT5G20960 1469 / 0 AT-AO1, AOalpha, ATAO1, ATAO, AAO1 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2) AT2G27150 1457 / 0 AtAAO3, At-AO3, AOdelta, AAO3 Arabidopsis thaliana aldehyde oxidase 3, Aldehyde oxidase delta, abscisic aldehyde oxidase 3 (.1.2) AT1G04580 1451 / 0 ATAO-4, ATAO2, AAO4 ALDEHYDE OXIDASE 2, arabdopsis thaliana aldehyde oxidase 4, aldehyde oxidase 4 (.1) AT4G34890 474 / 3e-144 ATXDH1 xanthine dehydrogenase 1 (.1) AT4G34900 421 / 7e-125 ATXDH2 A. THALIANA XANTHINE DEHYDROGENASE 2, xanthine dehydrogenase 2 (.1) AT1G02590 78 / 3e-17 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040474 [exp] 1741 / 0 AT3G43600 1555 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Lus10011279 [exp] 1555 / 0 AT5G20960 1315 / 0.0 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2) Lus10013393 [exp] 1536 / 0 AT3G43600 1657 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Lus10008429 [exp] 1524 / 0 AT3G43600 1652 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Lus10034306 [exp] 463 / 5e-140 AT4G34890 2127 / 0.0 xanthine dehydrogenase 1 (.1) Lus10023586 [exp] 181 / 5e-52 AT3G43600 209 / 5e-63 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G153600 [exp] 1637 / 0 AT3G43600 1741 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Potri.004G191300 [exp] 1622 / 0 AT2G27150 1678 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Aldehyde oxidase delta, abscisic aldehyde oxidase 3 (.1.2) Potri.009G054600 [exp] 436 / 2e-130 AT4G34890 2077 / 0.0 xanthine dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02738 [flax] [poplar] Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde dehydrogenase PF01315 [flax] [poplar] Ald_Xan_dh_C Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CL0233 [flax] [poplar] SufE_NifU PF03450 [flax] [poplar] CO_deh_flav_C CO dehydrogenase flavoprotein C-terminal domain CL0486 [flax] [poplar] Fer2 PF01799 [flax] [poplar] Fer2_2 [2Fe-2S] binding domain CL0077 [flax] [poplar] FAD_PCMH PF00941 [flax] [poplar] FAD_binding_5 FAD binding domain in molybdopterin dehydrogenase CL0486 [flax] [poplar] Fer2 PF00111 [flax] [poplar] Fer2 2Fe-2S iron-sulfur cluster binding domain
Representative CDS sequence Show only first row Show all	>Lus10019386 pacid=23163231 polypeptide=Lus10019386 locus=Lus10019386.g ID=Lus10019386.BGIv1.0 annot-version=v1.0 ATGGACTATGAGAAGAAAACTGAAGACAACAGCAGCAGCAGCAGCAGCAGCAGCAACCTAGTGTTTGCTATCAACAACAAGAGATTTGAGATAAGACACG TAGACCCATCAATCACTCTGCTTCAATTCTTGCGTTGCCACACCAGTTTCAAGAGTGCCAAGCTCAGTTGTGGTGAAGGTGGGTGTGGTGCTTGTGTTGT TGTGGTCTCCAAGTACGACTCTGAGGTTGACAAAGTTGAGGACTTTACCGTAAGCTCCTGCCTAACGTTGCTGTGCAGTTTGAATGGATGTTCCATCACA ACTTCTGAAGGGATTGGAAACACCAGACAAGGCTTCCACCCAATCCACCACAGGTTTGCTGCATTCCATGCTTCTCAGTGTGGCTTCTGCACTCCCGGAA TGTCTATGTCCTTGTACGGAGCACTTGTCAATAATGCTGACGACACCAAGCTCACAGCAGCAGAAGCTGAGAAAGCCATCTCAGGCAACCTCTGCCGTTG TACAGGTTACAGACCCATTGCAGATGCCTGCAAGAGCTTTGCAGCTGATGTCGATATCGAAGATTTGGGAGCCAACTCTTCCTGGAAAAAGGGTGACACT GACCATGATAACATTACCAGATTACCCTTCCCTGAATTCCTGAAAGCACATGCGAAATCGAAATCCTCCTTGGTTTTGAACTCCAAAAACCAGTCATGGA TTGTTCCTGGCACTCTCGAGGAGCTTCATCATAGCTTGCTGAATGAAACAGATCAAAAGATGAAACTAGTGGTTGGAAATACAGGCATGGGTTACTTCAA GGAACAAGGTTGCTATGACAGATACATTGACCTCAGGTATATTCCCGAGCTCTCCAAAATTAGCAAGGATCAGAATGGGATCAAATTAGGAGCAGCTGTA ACAATTTCCGGAGCTATAAGAGCTTTCAAGAAAGAGAATGAATGTGAAATATACCAAAAGATAGCAGCCCATATGGAGAAAATTGCAACTCCGTCTGTTC GAAATATGGGCAGCATAGGTGGGAACCTGGTGATGGCACAAAGGAAATGTTTTCCTTCAGATATTGCTACTCTTCTTCTTGCAGTTGGTTCTTATGTTGA GATACTACTATTGACTGGTGGTACCCGTGAAAGACTCACTTTGGAAGAATTCCTGGAGAGGGCACCATTGGATTCTAGAGCCATCCTAACCAGTATTGAG ATACCTATCTGGAAATCTGTTACTAATAGCAGTAGTAGTATTAGTACAGTTTTGTTTGAAACATATCGAGCTTCGCCAAGACCCCTAGGGAATGCATTAC CTCATCTCAATTCTGCCTTGTTGGCAGAGATTAGTACTAGTAGTAAAAGTAATGTGATAAACGTATGCCGATTGGCATTTGGTGCATATGGAACGAAACA TGCAATTAGAGCAAGCAAGGCTGAGGAATTTTTGGCAGGGAAGAAAGTAACTGCTAGTGTTGTATATGAAACTGTCAGACTAATTAAAAACAGTGTGGTA CCAGAAGACGGGACCTTGAATCCTGAATACAGGTCAAGCTTGGCTGTTAGTTTTGTTTTCGAATTCCTTACCCCTTTGATACAAGACCCCCTTCTTAGCA CTTTGATACAAGACCCCCTTCTTAGCCCTTTGATACAAGACCCCCTTGGCAATGGAAAATCAATATCTGATCAAGCTGCATCCCAGAGAGACGGGTTAAA ATGCTCTCGCCTATTATCATCTGGAAAGCAGATATTCCAAGTGCACAAAGAGAATCACCCTGTTGGGGAACCAATTACAAAATCTGGAGCTCTACTTCAA GCTTCTGGTGAGGCAGTTTACGTAGATGACATTCCTTCTCCTCCCAATTGCCTATATGGAGCATTTGTGTGTAGCACTAAGCCTTTTGCTAGAGTCAAGG ATATAGGCTTCAACAAGTCCAAACCTCTTCCAGATGGAGTTGTTGCACTTATATCTTCCAACGACATCCCAAAAGGAGGCAACAATGTAGGCTCAATCGG TCAAGAAACTCTGTTTGCCCGTGAAGTTACTCATTGTGCTGGAGAACGCCTTGCTATGGTGGTTGCAGATTCACAGAAGCAGGCAGATGCAGCAGAAAAC CTGGTGATGGTAGATTATGACATTGAGAGCCTGGAATCACCAATCCTAACCGTAGAAGAGGCTGTTAAGAGATCCAGCTTTATCAGTATTCCTGATTTTT ATAAACCAGAACAAGTGGGTGATATAACAAGAGGAATTGCGGAAGCTGATTACAGAATAATCAATGCTAAGATGAAACTCAATTCACAATACTTCTTCTA TATGGAAACACAAACCGCTTTGGCCGTACCAGATGAAGATAACTGCATCGTGGTTTATAGCTCCAGCCAGTGGCCAGAGGTTGCTAGTGTAATTATTGCA CAATGTCTTGGTATTCCTCAGCATAATGTGCGTGTGATCACAAGAAGGGTTGGCGGTGGTTTTGGTGGAAAGGCTATCAAATCTATCCCTATAGCTACAG CATGTGCACTTGCAGCACACGTACTACAGAGACCAGTTAGGACATACGTGAATCGCAAAACTGATATGATAATGACAGGAGGCAGACATCCAATGAAAAT AACGTATAGTGTAGGTTTCAAATCCAATGGGAAGATCACAGGTCTGAAACTTGATATCCTTATCAATGCTGGCATGTCTCCAGATGTGAGTGCCATGATT CCGGACCACTTGGTGGGAACACTTAAAAAATATAACTGGGGTGCGTTATCATTTGATATAAAGCTATGCAAGACAAACCACTCTAGTAAAACAGCAATGC GAGCTCCAGGTGAAGTCCAAGGAACCTTTATAGCTGATACAGTAATGGAACATGTAGCATCAACTCTTTGTATCGATGTGGATCATGTCAAAGCTATAAA CCTTCACTCTTATGATAGCATCAAGTTGTTCTATGCTAGAAGCTGCGGAAAACCTCATGAATATACTCTGCCATCCATATGGGACAAGGTAGCTGAATCA TCAAACTTTAACAAGAGGAGAGAAATGGTGGAGGAATTCAACAGCCATAACTTGTGGAGGAAGAAAGGTATTTCTCGCATACCAGTCATTTTTGAAGTAA GGATTGTGCCAACCCCAGGGAAGGTAAGCATTCTGAATGATGGCTCAATTGTTGTGGAAGTCGGAGGCGTAGAACTGGGCCAGGGCCTCTGGACAAAGTC TAAACAAATGGCTGCATATGCATTGAGTTCTATCAAGTGTGAGGATGCAGACAGTCTGCTAGAGAGGGTAAGGGTGATTCAGGCTGATTCCTTAACTCTA ATCCAAGGAGGAATCACTGCTGGGAGTACAAAATCTGAAGCAAGCTGCGAAGCAATCAGACTTTGCTGCAATGCTCTAGTTGAGAGATTGGTTCCTCTCA AGGAGAAGATGCACAAGGAAACTGGGCCGAATACAAATATTAGTTGGCAGATGCTCATTTCCCAGGCATATGGAGCTTCGCTCAACTTAAGTGCAAGTTG TCTGTATGTCCCAGACTTCGCTACCAGCCGTTACTTAAACTATGGTGCAGCAGCAAGTGAGGTAGAGGTAAATCTTCTAACAGGTGAAACCACAATTCTT AGATCAGATCTAATATATGACTGTGGACAAAGTCTGAATCCTGCCGTCGACATGGGACAGATTGAAGGAGCTTTCGTTCAGGGAATCGGGTTCTTCATGT TGGAAGAGTACAGCACAAACTCAGACGGAATAGTGACAACAGACAGCACCTGGACATACAAGATTCCAACCATAGATACAATTCCCAAAGAGTTCAATGT TGAAATCCTCAGCAGCGGACATCACCAGAATCGAGTTCTGTCTTCCAAAGCCTGCGGCGAGCCACCCTTATTGTTGGCATCATCAGTTCACTGTGCGACA AGAGCAGCCGTTAAAGAAGCCAGGAAACAGCTACATTTGTGGGGCGGCCTCGACAGTGATTACGCAAGGTTCCAATTCGATGCACCTGCCACCATGGCAG TTGTAAAGGAGCTATGTGGGTTGAACAGTGTGGAGAGCCACATGAAATGGAAATTGAACCATAGGTAA
AA sequence Show only first row Show all	>Lus10019386 pacid=23163231 polypeptide=Lus10019386 locus=Lus10019386.g ID=Lus10019386.BGIv1.0 annot-version=v1.0 MDYEKKTEDNSSSSSSSSNLVFAINNKRFEIRHVDPSITLLQFLRCHTSFKSAKLSCGEGGCGACVVVVSKYDSEVDKVEDFTVSSCLTLLCSLNGCSIT TSEGIGNTRQGFHPIHHRFAAFHASQCGFCTPGMSMSLYGALVNNADDTKLTAAEAEKAISGNLCRCTGYRPIADACKSFAADVDIEDLGANSSWKKGDT DHDNITRLPFPEFLKAHAKSKSSLVLNSKNQSWIVPGTLEELHHSLLNETDQKMKLVVGNTGMGYFKEQGCYDRYIDLRYIPELSKISKDQNGIKLGAAV TISGAIRAFKKENECEIYQKIAAHMEKIATPSVRNMGSIGGNLVMAQRKCFPSDIATLLLAVGSYVEILLLTGGTRERLTLEEFLERAPLDSRAILTSIE IPIWKSVTNSSSSISTVLFETYRASPRPLGNALPHLNSALLAEISTSSKSNVINVCRLAFGAYGTKHAIRASKAEEFLAGKKVTASVVYETVRLIKNSVV PEDGTLNPEYRSSLAVSFVFEFLTPLIQDPLLSTLIQDPLLSPLIQDPLGNGKSISDQAASQRDGLKCSRLLSSGKQIFQVHKENHPVGEPITKSGALLQ ASGEAVYVDDIPSPPNCLYGAFVCSTKPFARVKDIGFNKSKPLPDGVVALISSNDIPKGGNNVGSIGQETLFAREVTHCAGERLAMVVADSQKQADAAEN LVMVDYDIESLESPILTVEEAVKRSSFISIPDFYKPEQVGDITRGIAEADYRIINAKMKLNSQYFFYMETQTALAVPDEDNCIVVYSSSQWPEVASVIIA QCLGIPQHNVRVITRRVGGGFGGKAIKSIPIATACALAAHVLQRPVRTYVNRKTDMIMTGGRHPMKITYSVGFKSNGKITGLKLDILINAGMSPDVSAMI PDHLVGTLKKYNWGALSFDIKLCKTNHSSKTAMRAPGEVQGTFIADTVMEHVASTLCIDVDHVKAINLHSYDSIKLFYARSCGKPHEYTLPSIWDKVAES SNFNKRREMVEEFNSHNLWRKKGISRIPVIFEVRIVPTPGKVSILNDGSIVVEVGGVELGQGLWTKSKQMAAYALSSIKCEDADSLLERVRVIQADSLTL IQGGITAGSTKSEASCEAIRLCCNALVERLVPLKEKMHKETGPNTNISWQMLISQAYGASLNLSASCLYVPDFATSRYLNYGAAASEVEVNLLTGETTIL RSDLIYDCGQSLNPAVDMGQIEGAFVQGIGFFMLEEYSTNSDGIVTTDSTWTYKIPTIDTIPKEFNVEILSSGHHQNRVLSSKACGEPPLLLASSVHCAT RAAVKEARKQLHLWGGLDSDYARFQFDAPATMAVVKELCGLNSVESHMKWKLNHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10019386 [exp]	0	1
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10018068 [exp]	1.7	0.9352
AT3G21670			Major facilitator superfamily ...		Lus10030006 [exp]	2.6	0.9081
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10020485 [exp]	2.8	0.9320
AT5G35970			P-loop containing nucleoside t...		Lus10024975 [exp]	2.8	0.9238
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10042061 [exp]	3.5	0.9256
AT1G57770			FAD/NAD(P)-binding oxidoreduct...		Lus10035770 [exp]	4.2	0.8939
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10017005 [exp]	4.5	0.9200
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10018067 [exp]	4.9	0.9144
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10036543 [exp]	5.7	0.8974
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10034647 [exp]	6.5	0.8659

Compare expression of checked genes

Lus10019386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.