Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24503 494 / 1e-169 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT3G48000 365 / 6e-119 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT1G23800 361 / 3e-117 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT1G74920 251 / 1e-75 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT3G48170 244 / 4e-73 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G79440 214 / 2e-61 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT2G14170 132 / 1e-32 ALDH6B2 aldehyde dehydrogenase 6B2 (.1.2.3) AT3G66658 122 / 4e-29 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT1G54100 103 / 5e-23 ALDH7B4 aldehyde dehydrogenase 7B4 (.1.2) AT2G24270 98 / 2e-21 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023626 [exp] 571 / 0 AT3G24503 753 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10024259 [exp] 494 / 3e-169 AT3G24503 745 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10023625 [exp] 492 / 2e-168 AT3G24503 749 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10043245 [exp] 465 / 4e-159 AT3G24503 487 / 2e-170 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10029166 [exp] 372 / 2e-121 AT1G23800 886 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10012999 [exp] 370 / 2e-120 AT1G23800 889 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10024261 [exp] 260 / 9e-76 AT3G03940 961 / 0.0 Protein kinase family protein (.1) Lus10030143 [exp] 241 / 2e-73 AT1G79580 279 / 1e-91 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10034115 [exp] 233 / 4e-68 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G075000 [exp] 540 / 0 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Potri.002G189900 [exp] 371 / 5e-121 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.015G074100 [exp] 361 / 4e-117 AT3G48000 885 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.012G078700 [exp] 357 / 2e-115 AT3G48000 872 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.015G070600 [exp] 240 / 3e-71 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.012G075600 [exp] 238 / 2e-70 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.010G174000 [exp] 207 / 8e-59 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.001G242333 [exp] 130 / 7e-32 AT2G14170 895 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.009G078700 [exp] 131 / 9e-32 AT2G14170 753 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.001G283100 [exp] 130 / 1e-31 AT2G14170 891 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10019387 pacid=23181485 polypeptide=Lus10019387 locus=Lus10019387.g ID=Lus10019387.BGIv1.0 annot-version=v1.0 ATGGCTAGCCACGTCAGTAGCGGAAGGACGGGCGCCCTCTTATCCAAGTACGGACGCCTTCTTAACCGTGATAGCCCCGCCGGCGGAGATAAAGTTCACC AAGCTGTTTATAGACGGCAAATTCGAAAGAAGTTTGAAACGATTGATCCAAGAACAGGGGAGGTGATAACAGAGGTATCAGAAGGAGATAAAGAAGACAT TGATTTGGCTGAGGTATCAGAAGGAGATAAAGAAGACATTGATTTGGCTGTCCAAGCCGCCCGCCGTGCCTTCGACCATGGCCCCTGGCCTCGCTTTCCC GGCGTTGCTAGGGCGAGGATAATGAACAAATTTGCGGACTTAATCGAGCAACACATAGAGGAGATCGCGACGCTCGACACCCTCAACGCCGGAAAACTGT TGAGTTGGGGCAAAGCGATAGACATCCCATCCACGGCCAACTGTCTCCGGTACTACGCCGGAGCTGCCGACAAGATCCACGGAGATGTGTTGAAGATGTC TCGGGAGCTTCAGGCCTACACATTGCGGGAGCCAGTCGGTGTGGTGGGACACATCATCCCTTGGAATTTTCCGAGCACCATGTTCTTCATGAAGGTCAGC CCGGCCCTGGCTGCCGGTTGTACGATGGTCGTTAAGCCCGCCGAGCAAACCCCACTTTCCGCCTTGTTCTACGCCTATCTTGCTAAACAGGCGGGGATTC CTGACGGGGTAATTAACGTTGTGAATGGATTTGGCCCAACCGCTGGGGATGCACTTGCTTCCCACATGGACGTTGACAAGCTGAGTTTTACAGGGTCAAC CGAAGTAGGGAGGAAGGTGATGCAGGCAGCAGCGACCAGCAATCTGAAACAAGTATCACTTGAGTTGGGCGGCAAATCTCCTATGCTAATTTTCGAAGAC GCTGACATCGATAAGGCTGCTGATCTCGCCCTCTTAGGCATCCTCTACAATAAGGGAGAAGTGTGTGTAGCAAGTTCGCGAGTGTATGTGCAGGAAGGGA TCTACGATGAATTCGTCAGCAAGTTGGCTGTGAAAGCCAAAGACTGGGTCGTTGGTGATCCTTTCCACCCGGCTTCTCGTCTCGGCCCACAGGTCGATAA GCAACAGTATGAGAAGATACTGTCATACATTGAGCAAGGCAAGAAAGAAGGAGCTACCTTATTAACCGGCGGTAAAGCCGCTGCCAATAAGGGATATTAC ATTCATCCTACTGTCTTCACCGATGTTACGCTGAGTTTTACAGGGTCAACCGAAGTAGGGAGGAAGGTGATGCAGGCAGCAGCGACCAGCAATCTGAAAC AGGTATCACTTGAGTTGGGCGGCAAATCTCCTATGCTAATTTTCGACGATGCTGACATTGATAAGGCTGCTGATCTCGCCCTCTTAGGCATCCTCTACAA TAAGGGAGAAGTGTGTGTAGCAAGTTCGCGGGTGTATGTGCAGGAAGGAACATACGATGAATTCGTCAGCAAGTTGGCTGTGAAAGCCAAAGACTGGGTC GTTGGTGATCCTTTCCACCCGGCTTCTCGTCTCGGCCCACAGGTCGATAAGCAACAGTATGAGAAGATACTGTCATACATTGAGCAAGGCAAGAAGGAAG GAGCTACCTTATTAACCGGTGGAAAAGCCGCTGCCAATAAGGGATATTACATTCATCCTACTGTCTTCACCGATGTTACGGAGGATATGACCATAGCAAA AGACGAGATCTTCGGTCCGGTGATGTCACTCATGAAGTTCAAAACTATCGAAGAAGCGATCAAGTTGGCGAACAATACAAGGTACGGGTTAGCAGCGGGG ATAGTGACCAACAACTTGGACATTGCAAACACAGTTTCGAGATCGATCAGAGCAGGAGTCATCTGGATTAACTGTTACTTTGCGTTCGATAATGACTGCC CTTACGGAGGGTACAAATCGAGTGGCTTCGAAAGGGACCTTGGTTTGGAGGCTCTTCATAAGTATCTTCATGTTAAGTCTGTTGTCACTCCCATTTACAA CTCCCCTTGGCTATGA
AA sequence Show only first row Show all	>Lus10019387 pacid=23181485 polypeptide=Lus10019387 locus=Lus10019387.g ID=Lus10019387.BGIv1.0 annot-version=v1.0 MASHVSSGRTGALLSKYGRLLNRDSPAGGDKVHQAVYRRQIRKKFETIDPRTGEVITEVSEGDKEDIDLAEVSEGDKEDIDLAVQAARRAFDHGPWPRFP GVARARIMNKFADLIEQHIEEIATLDTLNAGKLLSWGKAIDIPSTANCLRYYAGAADKIHGDVLKMSRELQAYTLREPVGVVGHIIPWNFPSTMFFMKVS PALAAGCTMVVKPAEQTPLSALFYAYLAKQAGIPDGVINVVNGFGPTAGDALASHMDVDKLSFTGSTEVGRKVMQAAATSNLKQVSLELGGKSPMLIFED ADIDKAADLALLGILYNKGEVCVASSRVYVQEGIYDEFVSKLAVKAKDWVVGDPFHPASRLGPQVDKQQYEKILSYIEQGKKEGATLLTGGKAAANKGYY IHPTVFTDVTLSFTGSTEVGRKVMQAAATSNLKQVSLELGGKSPMLIFDDADIDKAADLALLGILYNKGEVCVASSRVYVQEGTYDEFVSKLAVKAKDWV VGDPFHPASRLGPQVDKQQYEKILSYIEQGKKEGATLLTGGKAAANKGYYIHPTVFTDVTEDMTIAKDEIFGPVMSLMKFKTIEEAIKLANNTRYGLAAG IVTNNLDIANTVSRSIRAGVIWINCYFAFDNDCPYGGYKSSGFERDLGLEALHKYLHVKSVVTPIYNSPWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10019387 [exp]	0	1
AT5G14760		AO	L-aspartate oxidase (.1)		Lus10014539 [exp]	7.7	0.8499
AT1G32160			Protein of unknown function (D...		Lus10000084 [exp]	42.4	0.8290
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10009941 [exp]	43.0	0.8481
AT2G29070			Ubiquitin fusion degradation U...		Lus10029298 [exp]	51.6	0.8583
					Lus10030774 [exp]	66.7	0.8508
AT1G47710			Serine protease inhibitor (SER...		Lus10019009 [exp]	103.3	0.8414
AT2G24860			DnaJ/Hsp40 cysteine-rich domai...		Lus10026899 [exp]	103.7	0.8049
AT1G32160			Protein of unknown function (D...		Lus10030993 [exp]	104.3	0.8448
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Lus10031273 [exp]	109.8	0.8263
AT5G15140			Galactose mutarotase-like supe...		Lus10007251 [exp]	110.7	0.8156

Compare expression of checked genes

Lus10019387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.