Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24490 184 / 2e-54 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT3G11100 75 / 5e-15 Trihelix sequence-specific DNA binding transcription factors (.1) AT5G05550 75 / 5e-15 Trihelix sequence-specific DNA binding transcription factors (.1.2) AT3G14180 72 / 2e-13 Trihelix ASIL2 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) AT3G24860 65 / 2e-11 Trihelix Homeodomain-like superfamily protein (.1) AT1G54060 61 / 4e-10 Trihelix ASIL1 6B-interacting protein 1-like 1 (.1) AT3G54390 61 / 5e-10 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G58630 61 / 6e-10 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G10030 61 / 7e-10 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2) AT2G44730 52 / 5e-07 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017725 [exp] 256 / 2e-81 AT3G24490 243 / 1e-77 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10033094 [exp] 256 / 2e-81 AT3G24490 238 / 6e-76 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10025772 [exp] 167 / 2e-47 AT3G24490 223 / 3e-70 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10035893 [exp] 160 / 6e-45 AT3G24490 214 / 1e-66 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10019568 [exp] 71 / 3e-15 AT3G24490 50 / 8e-09 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10025406 [exp] 73 / 5e-14 AT3G14180 202 / 3e-63 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10007273 [exp] 72 / 1e-13 AT3G14180 200 / 4e-62 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10015282 [exp] 69 / 1e-13 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10025404 [exp] 69 / 7e-13 AT3G14180 197 / 1e-61 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G075500 [exp] 230 / 1e-71 AT3G24490 252 / 1e-81 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.001G179800 [exp] 171 / 6e-49 AT3G24490 206 / 2e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.003G056000 [exp] 163 / 2e-45 AT3G24490 205 / 8e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.008G071300 [exp] 86 / 7e-19 AT5G05550 209 / 3e-67 sequence-specific DNA binding transcription factors (.1.2) Potri.001G113600 [exp] 71 / 2e-13 AT3G58630 138 / 1e-38 sequence-specific DNA binding transcription factors (.1) Potri.003G118600 [exp] 70 / 4e-13 AT3G58630 139 / 5e-39 sequence-specific DNA binding transcription factors (.1) Potri.010G233500 [exp] 64 / 1e-10 AT3G10030 434 / 3e-148 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.008G027000 [exp] 62 / 3e-10 AT3G10030 457 / 2e-157 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.006G117300 [exp] 57 / 9e-09 AT3G10030 591 / 0.0 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.003G195300 [exp] 56 / 3e-08 AT3G54390 288 / 2e-96 sequence-specific DNA binding transcription factors (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019388 pacid=23181590 polypeptide=Lus10019388 locus=Lus10019388.g ID=Lus10019388.BGIv1.0 annot-version=v1.0 ATGACTACACCACCTGTCCTCGCCTCCGACACCAACAACGGGACCTCCATCACCACCACCCCATCATCAACACCAAGGTCGCAACCAGTCTTGAACTCTT ACCGCCGCCACACACCCCACAAACTCCATCCCAATGCAGCACCATCAATCCACATTCCCCAACCGACAACACCAGCGACCGAATCGCAACTAGATTCGGC GGAGGAACGCAAGCAACACCGTTCTGATTTGACCACTTATGATATGATGGATACTGAGGATACATCGAGGCATAAACCACACAGGTCACCCAACAAGCTC GGTCTGGGACTTGTTCTCACGACCACAATCGATCAGCCTACGACAACCGATCAGCACAGGGCGGAAGAGTATCATCAGCTGTACTTGGAGAAGGGCGGTG GCAGAGGCACGGAGAAATTTACTGCAACTGAACTACCCACCCAAATCTTACACACTGAAACCCCGCACTGCGAAGAAGAAGAAGAAGACTGCTTCACGGT TAAGCAGCTCGAGAAGCCATCTGTTTCCAATTATGAATTCTTGGCAAGACGGAGGAGGAATAATAATCACAGCAGCGAATCAGATTTCTCTGGAGTGTGG AATGACGAGGATACATCGGTCCTTTTGGAAGTTTGGGGGGAGAGGTTCTTGGAATTGGGGAGGCACAGTTTAAGGTCAGAGGATTGGGTGGAGGTTGCTA GCAAAGTTTCTGAGGCGTTGGGAATTGAAAGGACAGAAGGTCAGTGTAGGGAGATGATGGATTCTTTGAAGAAAAGGTACAGAAAAGAGCAGGGGAAAAG TAAGAAATGGTCTTTTTATAGGAAGATGGATATGTTGATGAGGAGACAAGAGAATCGGAATGTTCGTAGTTTGTGCTGGGGGTTGGATTCGGGAGAGTAT GTGTTTATGGATACAGGTTTCTACTTGCAGAGAGCGAATGGGAATGATGAGATGAGAGATAGTCCTTGCGACTCTGAAGAGGATGATGATAACACTGCAA GTGGTGATACTGATATGTTCAAAGGGTTGACTGTGCTGGCAGAATCGTTTCGTAAGTTTGGTGAGATATACAAGAGAATTGAGAGCGTTAAGAAGGAGCA GATGCTGGAGTTGGAGAGGATGCGGGGTGATTTCCAGGCAGAATTGGAGTTGCAGAGGAAGCAAATCTTGGAGATAGCTCTGGCCGAGATTGCTAAAATC AGAGATGAGGATGATGAGGATGATGATGATACTGACCCTGAAAGCAATGTCAATAAAGAAAGAAAAGCTGAGGATGAGAGTGGTGGTGATGATTCTGGGG TGAATATCAGCTAA
AA sequence Show only first row Show all	>Lus10019388 pacid=23181590 polypeptide=Lus10019388 locus=Lus10019388.g ID=Lus10019388.BGIv1.0 annot-version=v1.0 MTTPPVLASDTNNGTSITTTPSSTPRSQPVLNSYRRHTPHKLHPNAAPSIHIPQPTTPATESQLDSAEERKQHRSDLTTYDMMDTEDTSRHKPHRSPNKL GLGLVLTTTIDQPTTTDQHRAEEYHQLYLEKGGGRGTEKFTATELPTQILHTETPHCEEEEEDCFTVKQLEKPSVSNYEFLARRRRNNNHSSESDFSGVW NDEDTSVLLEVWGERFLELGRHSLRSEDWVEVASKVSEALGIERTEGQCREMMDSLKKRYRKEQGKSKKWSFYRKMDMLMRRQENRNVRSLCWGLDSGEY VFMDTGFYLQRANGNDEMRDSPCDSEEDDDNTASGDTDMFKGLTVLAESFRKFGEIYKRIESVKKEQMLELERMRGDFQAELELQRKQILEIALAEIAKI RDEDDEDDDDTDPESNVNKERKAEDESGGDDSGVNIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10019388 [exp]	0	1
AT3G61113			Ubiquitin related modifier 1 (...		Lus10041378 [exp]	1.0	0.9347
AT3G58170		ATBET11, ATBS14...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10033868 [exp]	2.4	0.9338
AT4G39100		SHL1	short life, PHD finger family ...		Lus10041960 [exp]	4.0	0.9158
AT5G47090			unknown protein		Lus10035047 [exp]	4.2	0.9224
AT1G50940		ETFALPHA	electron transfer flavoprotein...		Lus10011156 [exp]	5.7	0.9200
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10021515 [exp]	7.7	0.9267
AT1G59600		ZCW7	ZCW7 (.1)		Lus10018676 [exp]	8.3	0.9107
AT4G10170			SNARE-like superfamily protein...		Lus10002944 [exp]	8.4	0.9252
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10028956 [exp]	9.2	0.9118
AT1G32370		TTM1, TOM2B	tobamovirus multiplication 2B ...		Lus10040105 [exp]	11.4	0.9010

Compare expression of checked genes

Lus10019388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.