Plant FIBer expression Database

Lus10019392 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G02220 261 / 1e-88 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043249
[exp]
383 / 1e-136 AT3G02220 270 / 4e-92 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G116800
[exp]
274 / 8e-94 AT3G02220 246 / 1e-82 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10217 DUF2039 Uncharacterized conserved protein (DUF2039)
Representative CDS sequence
>Lus10019392 pacid=23181540 polypeptide=Lus10019392 locus=Lus10019392.g ID=Lus10019392.BGIv1.0 annot-version=v1.0
ATGAGCAGTCGAAGCGGCCCCCCAAAGCACCAAAATCAGTTTGCCTGGAAGCCCAAGGCCGGTATCAAGATCAATGAAACGGAAGTGGGTGGGAGGTTTA
GGCCATTGCCAGCGATTACGGGAGTGTGCCAAAGATGTAAAGAGCAGATCGATTGGAAGCGCCGCTATGGGAAGTACAAGACTCTCATCGAGCCAGCAAA
ATGCCAACAATGTTCCAAACGTGCAGTCCGACATGCGTACCATAATTTATGCTCTGGTTGCGCAAAGGAACAAAAGGTTTGCGCAAAGTGTCGATGCCGT
GTGGACCACATTGTCGGAAGGGATGCTGCTGAAGTAGAGGCTGAGCAGAAGACCCTGGAGGATGCCATTAAAAATGCTCGAGAGAGAGATCGGAGGACCC
TCCTGCGATCAATGAACAAAGGTATAAGCAACAACAAAACTTCAGAGAAGCCGGCAACCACAGATGGAAAGAAAGTCGGGGATCTGTTTCCCAGTGCATC
ACTTGAAGGGTATGCTGCCAAAGCAGCAGGAGGTCATATTCCAAGTGTTGGGGACCTCGATGAAGATGATGATGGCGGAGAAGAAGAAGTTGATGACGAG
GAGGTGAGTGATGAAGAAGGTGACGACGTGGGCGAGAATGATGAAGCTGAAAGGGGAAATGGTATTGAAGAAAAAGTGCATCAAGATCATCATTAG
AA sequence
>Lus10019392 pacid=23181540 polypeptide=Lus10019392 locus=Lus10019392.g ID=Lus10019392.BGIv1.0 annot-version=v1.0
MSSRSGPPKHQNQFAWKPKAGIKINETEVGGRFRPLPAITGVCQRCKEQIDWKRRYGKYKTLIEPAKCQQCSKRAVRHAYHNLCSGCAKEQKVCAKCRCR
VDHIVGRDAAEVEAEQKTLEDAIKNARERDRRTLLRSMNKGISNNKTSEKPATTDGKKVGDLFPSASLEGYAAKAAGGHIPSVGDLDEDDDGGEEEVDDE
EVSDEEGDDVGENDEAERGNGIEEKVHQDHH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G02220 unknown protein Lus10019392
[exp]
0 1
AT3G12760 unknown protein Lus10009599
[exp]
1.0 0.8807
AT5G50600 ATHSD1 hydroxysteroid dehydrogenase 1... Lus10043187
[exp]
2.8 0.8264
AT3G16175 Thioesterase superfamily prote... Lus10006834
[exp]
5.0 0.7960
AT5G39210 CRR7 chlororespiratory reduction 7 ... Lus10032982
[exp]
5.7 0.8458
AT2G31140 Peptidase S24/S26A/S26B/S26C f... Lus10022921
[exp]
5.8 0.8536
AT4G31540 ATEXO70G1 exocyst subunit exo70 family p... Lus10018672
[exp]
6.7 0.8400
AT5G55160 ATSUMO2, SUMO2,... small ubiquitin-like modifier ... Lus10032560
[exp]
7.4 0.8222
AT3G02220 unknown protein Lus10043249
[exp]
9.6 0.8425
AT5G27430 Signal peptidase subunit (.1) Lus10040138
[exp]
11.4 0.8243
AT4G11560 bromo-adjacent homology (BAH) ... Lus10008527
[exp]
12.2 0.7875

Lus10019392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.