Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24440 355 / 1e-115 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) AT4G30200 263 / 2e-79 VEL1, VIL2 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) AT5G57380 257 / 4e-78 VIN3 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) AT2G18880 176 / 1e-48 VIL3, VEL2 VIN3-like 3, vernalization5/VIN3-like 2, vernalization5/VIN3-like (.1) AT2G18870 90 / 3e-20 VIL4, VEL3 VIN3-like 4, vernalization5/VIN3-like 3, vernalization5/VIN3-like (.1) AT3G63500 45 / 0.0001 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043251 [exp] 889 / 0 AT3G24440 432 / 8e-145 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10019394 [exp] 659 / 0 AT3G24440 499 / 8e-171 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10043250 [exp] 302 / 5e-98 AT3G24440 226 / 3e-68 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10038260 [exp] 201 / 3e-56 AT4G30200 561 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Lus10042869 [exp] 191 / 3e-54 AT5G57380 237 / 5e-71 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10028170 [exp] 190 / 4e-54 AT5G57380 239 / 8e-72 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10025841 [exp] 158 / 3e-41 AT4G30200 484 / 8e-163 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Lus10019718 [exp] 49 / 1e-05 AT3G63500 665 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10016399 [exp] 49 / 2e-05 AT3G63500 717 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G076500 [exp] 527 / 0 AT3G24440 531 / 0.0 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Potri.006G158676 [exp] 520 / 2e-178 AT3G24440 523 / 9e-179 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Potri.018G091500 [exp] 253 / 6e-75 AT4G30200 612 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.006G167800 [exp] 249 / 5e-74 AT4G30200 627 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.002G111600 [exp] 197 / 4e-56 AT2G18880 262 / 7e-81 VIN3-like 3, vernalization5/VIN3-like 2, vernalization5/VIN3-like (.1) Potri.008G138100 [exp] 44 / 0.0003 AT1G14740 729 / 0.0 Protein of unknown function (DUF1423) (.1) Potri.010G102600 [exp] 43 / 0.0007 AT1G14740 773 / 0.0 Protein of unknown function (DUF1423) (.1) Potri.009G059000 [exp] 42 / 0.001 AT3G63500 693 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF00041 [flax] [poplar] fn3 Fibronectin type III domain CL0390 [flax] [poplar] zf-FYVE-PHD PF07227 [flax] [poplar] PHD_Oberon PHD - plant homeodomain finger protein
Representative CDS sequence Show only first row Show all	>Lus10019393 pacid=23181621 polypeptide=Lus10019393 locus=Lus10019393.g ID=Lus10019393.BGIv1.0 annot-version=v1.0 ATGACTGAACTTAAGTCGTGTAACAAAACGAACAAGAAGCAGGAAACAAAGAAAAATCCTGCCACTAATAATCAGTCTTCTTCAAAGAAGCAGAAAAGAA AGGGGGATAATCCTACACGGATCGTGCATTCCTCTGATGAATCGCCGGAATTTGGGAGTGAAAACTCGTGGATATGTAAAAATTCTGCCTGCCGAGCTGT CTTATCGATCGAGGACTCATTTTGCGAGAGATGTTCTTGCTGTATCTGTCATTCCTTTGACGAGAATAAAGACCCGAGTCTGTGGTTGTTTTGCAAATCT GAATCTAGTGATGAGGATTCTTGTGGGCTCTCTTGTCACATTGAGTGTGCCTTCCAGCATGGAAAGGTTGGAGTTGTTGATCTCGGGCAACTCATGCAGC TAGATGGCAGTTATTGTTGCGCTTCTTGCGGTAAAGTGTCTGGCATTCTAGAATCCTGGAAGAAGCAGCTCACTATTGCCAAAGATGCACGTCGTGTTGA TGTGCTATGTTATAGAATAGACCTTAGTTATAGATTACTGGATGGAACTTCAAGATTCAAACAGTTACACGAATTCATAAAAGATGCGAAAGCCAAGCTA GAGACTGAGGTTGGCTCGATAAACGGCGTTTCTGCCAACTTGGCACGGGGCATTGTCAGCAGACTCCCTGTAGCTGGCGATGTGCTGAAACTTTGCTCTC TTGCAATTGAAAGAGCAGATGAATGGCTATCATCAACTACCAAAGTTAATTCTAATCTCAAAGAAGGCTCACTGCCCGCTGCCTGCAGGTTTTTCTTTGA AGAAGTAGCATCATCCTCCGTCATTATTATTCTGATCGAACTATCAGCTGCATCGTTTGCCGATGATATCAAAGGTTACAAACTGTGGTATAGCAAGAGT CGAGAAGAGACGCCTCAAAAGGAACCTGTTAGTGTGTTCCCAAAGACTCAGAGGAGGATTTTGATAACAAATCTGCAGCCATGCACAGAGTATACATTTC GAATTATGTCATTCACTGATTCTGGTGATTTAGGTCATTCAGAGGCCAAGTGCTTCACCAAAAGTGTCGACATTATTCGTAAGTATCCTAGTTCTTCTTC AGTTGCAGCAAATGGTAAGAAGGATGATCATCCTAACGAAAGAGGGAGTGAATTCTCCGGATTCAGAGTCCGGGAGCTTGGGAAAATCATACGTATGGCG TGGGCACAAGAGCGAGCCGGCACCGCCGTTGATTCCGGCCGGGGAGAAGAAGACACCAAGCGCAGCAGGAAGAGGATGAACGAGGAGGTGCATGAATGTG ACAGTACCCTCATCAATGGGGGATCCCCTTTTCGTGTCTCACGAGGAAAACCAGGCTCCTTAGACGACAGTTTTGTGTATTGTGTGAAGACGATCCGAAT GCTGGAATGTGGAGGTCACATCGATCAGGAATTCAGACTGAAACTGCTGACGTGGTTTAGCTTGAGATCAACGGAACAGGAGCGAAGGGTGGTGCATACT TTCATTAGGACTCTGAATGATGACCATGGTAGCTTAGCTGAACAGTTGGTTGATTCGTTCTCGGATGTCGTATCCAGTAAGAGGCCTAGGAATGGGTTCT GCAGTAAGTTATGGCATTGA
AA sequence Show only first row Show all	>Lus10019393 pacid=23181621 polypeptide=Lus10019393 locus=Lus10019393.g ID=Lus10019393.BGIv1.0 annot-version=v1.0 MTELKSCNKTNKKQETKKNPATNNQSSSKKQKRKGDNPTRIVHSSDESPEFGSENSWICKNSACRAVLSIEDSFCERCSCCICHSFDENKDPSLWLFCKS ESSDEDSCGLSCHIECAFQHGKVGVVDLGQLMQLDGSYCCASCGKVSGILESWKKQLTIAKDARRVDVLCYRIDLSYRLLDGTSRFKQLHEFIKDAKAKL ETEVGSINGVSANLARGIVSRLPVAGDVLKLCSLAIERADEWLSSTTKVNSNLKEGSLPAACRFFFEEVASSSVIIILIELSAASFADDIKGYKLWYSKS REETPQKEPVSVFPKTQRRILITNLQPCTEYTFRIMSFTDSGDLGHSEAKCFTKSVDIIRKYPSSSSVAANGKKDDHPNERGSEFSGFRVRELGKIIRMA WAQERAGTAVDSGRGEEDTKRSRKRMNEEVHECDSTLINGGSPFRVSRGKPGSLDDSFVYCVKTIRMLECGGHIDQEFRLKLLTWFSLRSTEQERRVVHT FIRTLNDDHGSLAEQLVDSFSDVVSSKRPRNGFCSKLWH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10019393 [exp]	0	1
AT1G73720		SMU1	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10038425 [exp]	3.0	0.8807
AT5G14640		ATSK13	shaggy-like kinase 13 (.1)		Lus10022254 [exp]	4.6	0.8605
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Lus10034689 [exp]	7.7	0.8592
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10020889 [exp]	7.7	0.8451
AT5G07670			RNI-like superfamily protein (...		Lus10038927 [exp]	8.1	0.8527
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10003606 [exp]	8.9	0.8378
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10030625 [exp]	9.9	0.8607
AT5G20170			RNA polymerase II transcriptio...		Lus10043284 [exp]	12.4	0.8325
AT5G48385			FRIGIDA-like protein (.1)		Lus10008744 [exp]	15.3	0.8395
AT5G54570		BGLU41	beta glucosidase 41 (.1)		Lus10037987 [exp]	15.7	0.8369

Compare expression of checked genes

Lus10019393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.