Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24430 728 / 0 HCF101 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) AT4G19540 158 / 3e-44 INDH, INDL IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) AT5G50960 117 / 7e-29 ATNBP35, NBP35 nucleotide binding protein 35 (.1) AT1G36272 69 / 1e-14 unknown protein AT5G24020 53 / 2e-07 ARC11, ATMIND1, MIND ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043252 [exp] 905 / 0 AT3G24430 817 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Lus10018779 [exp] 160 / 4e-44 AT4G19540 401 / 9e-140 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10024867 [exp] 160 / 1e-43 AT4G19540 402 / 1e-139 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10027463 [exp] 113 / 2e-27 AT5G50960 573 / 0.0 nucleotide binding protein 35 (.1) Lus10039219 [exp] 113 / 3e-27 AT5G50960 566 / 0.0 nucleotide binding protein 35 (.1) Lus10019468 [exp] 65 / 4e-12 AT4G19540 117 / 2e-32 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10011951 [exp] 62 / 4e-11 AT4G19540 111 / 3e-30 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10025895 [exp] 57 / 4e-09 AT4G19540 107 / 9e-28 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10038843 [exp] 50 / 2e-06 AT5G24020 501 / 3e-180 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G076600 [exp] 767 / 0 AT3G24430 835 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Potri.005G220500 [exp] 154 / 7e-43 AT4G19540 414 / 1e-146 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Potri.002G042600 [exp] 152 / 2e-42 AT4G19540 422 / 5e-150 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Potri.001G336900 [exp] 115 / 2e-28 AT5G50960 571 / 0.0 nucleotide binding protein 35 (.1) Potri.004G080100 [exp] 50 / 2e-06 AT5G24020 457 / 9e-163 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF10609 [flax] [poplar] ParA NUBPL iron-transfer P-loop NTPase CL0232 [flax] [poplar] NifU PF01883 [flax] [poplar] FeS_assembly_P Iron-sulfur cluster assembly protein CL0232 [flax] [poplar] PF06155 [flax] [poplar] GBBH-like_N Gamma-butyrobetaine hydroxylase-like, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10019395 pacid=23181625 polypeptide=Lus10019395 locus=Lus10019395.g ID=Lus10019395.BGIv1.0 annot-version=v1.0 ATGCAGATTCTATCAGCTCCATCTTCCCTGCATCTTTCACTCCAATGCTTGAAGCCTCACTCAAAGTCAGGAATTTCCTCGTTGCTTCAGTATTCCGTAC CGAATTCCTCGTCCTTAAGAAGCTGTATCTCAGCTTTGTCTCGGAGGTCGTACTCCAACTTGTGCTGCTTTACGACTAGAGCTGCTTCCACGGAAGTCGG TGCTTCTGTAACATCGGCCGAATTAAGCTCAGCCTTGGAGAGTGAAGTGCTGAAAGCCTTGTCGCAAATAATCGATCCTGATTTTGGAACGGACATAGTC ACTTGTGGATTTGTCAAAGATTTGGCGATTGATGAAGCTCAAGGAAAGGTGTCGTTCAGGCTGGAGCTCACAACACCGGCTTGTCCAATCAAGGACCTGT TTGAGCAGCAGGCCAATGAGGTGGTTGCTCGGCTTCCATGGGTTAAGAGTGTTAATGTGACAATGTCAGCACAACCAGCCAAGCCTATCTATGCAGGGGA ACTTCCTGCTGGACTTCAGACCATCTCAAATATCGTAGCAGTTTCGAGTTGCAAAGGGGGTGTGGGGAAATCAACTGTAGCTGTAAATCTTGCATATACT TTGGCTGATATGGGTGCTAGAGTTGGGATTTTTGATGCGGATGTCTATGGCCCAAGTTTACCAACCATGGTCTCTCCTGAAAACCGCTTGCTAGAGATGA ATCCAGAGAAACGAACAATTATCCCTACTGAATACTTGGGAGTCAAGTTGGTATCATTTGGGTTTGCTGGACAAGGCCGTGCTATAATGAGGGGTCCAAT GGTGTCTGGAGTGATCGACCAACTTCTCACAACTACTGAGTGGGGAGAGCTGGATTACCTGATAATTGACATGCCTCCTGGAACTGGTGACATACAACTT ACTTTATGCCAAGTTGTCCCATTGACTGCTGCTGTTATAGTCACCACTCCTCAGAAACTTGCATTTATTGATGTTGCAAAGGGTGTTCGGATGTTTTCAA AGCTTAAGGTGGTTAAGCAATTCGGAATTCCTCATCTCTTCGATCTTCCAATCAGACCAACTCTATCTGCTTCTGGAGATAGTGGAATGCCTGAAGTGGT CGCTGATCCTCAAGGTGAAGTCGCGAAGACTTTCCAGGAACTTGGAGTTTGTGTTGTTCAACAATGTGCAAAGATACGTCAACAAGTTTCAACTGCTGTC ACCTATGATAAATCAATCAAGGCAATCAAGGTGAAGGTACCAGACGCGGAAGAAGAGTTTCTTCTTCATCCTGCAACTGTGAGGAGAAATGATCGTTCAG CACAAAGCGTGGACGAATGGACAGGGGAGCAGAAACTGCAGTATACGGATATCCCGGAAGACATTGAACCTCTAGAAATTCGTCCAATGGGAAACTATGC AGTGCAAATAACATGGCCAGATGGATTTAACCAGATTGCTCCCTACGATCAGTTGCAAACAATTGAAAGGTTGGTTGGCGGGTGCTGA
AA sequence Show only first row Show all	>Lus10019395 pacid=23181625 polypeptide=Lus10019395 locus=Lus10019395.g ID=Lus10019395.BGIv1.0 annot-version=v1.0 MQILSAPSSLHLSLQCLKPHSKSGISSLLQYSVPNSSSLRSCISALSRRSYSNLCCFTTRAASTEVGASVTSAELSSALESEVLKALSQIIDPDFGTDIV TCGFVKDLAIDEAQGKVSFRLELTTPACPIKDLFEQQANEVVARLPWVKSVNVTMSAQPAKPIYAGELPAGLQTISNIVAVSSCKGGVGKSTVAVNLAYT LADMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFAGQGRAIMRGPMVSGVIDQLLTTTEWGELDYLIIDMPPGTGDIQL TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVVKQFGIPHLFDLPIRPTLSASGDSGMPEVVADPQGEVAKTFQELGVCVVQQCAKIRQQVSTAV TYDKSIKAIKVKVPDAEEEFLLHPATVRRNDRSAQSVDEWTGEQKLQYTDIPEDIEPLEIRPMGNYAVQITWPDGFNQIAPYDQLQTIERLVGGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Lus10019395 [exp]	0	1
					Lus10030090 [exp]	2.0	0.9564
AT2G34860		EDA3	embryo sac development arrest ...		Lus10023593 [exp]	3.5	0.9551
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Lus10022640 [exp]	3.9	0.9556
AT5G45680		ATFKBP13	FK506 BINDING PROTEIN 13, FK50...		Lus10006949 [exp]	4.2	0.9574
					Lus10005720 [exp]	5.0	0.9510
AT5G27560			Domain of unknown function (DU...		Lus10029915 [exp]	6.5	0.9428
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10020698 [exp]	7.7	0.9425
AT3G59780			Rhodanese/Cell cycle control p...		Lus10027050 [exp]	8.8	0.9352
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10013642 [exp]	9.5	0.9450
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Lus10040228 [exp]	9.5	0.9467

Compare expression of checked genes

Lus10019395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.