Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13360 597 / 0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G24360 579 / 0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2) AT5G65940 223 / 4e-69 CHY1 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) AT2G30660 209 / 2e-63 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT2G30650 203 / 3e-61 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT4G31810 181 / 2e-52 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT1G06550 180 / 2e-52 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G60510 173 / 1e-49 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT4G16800 61 / 4e-10 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT4G16210 56 / 1e-08 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043253 [exp] 788 / 0 AT4G13360 565 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10038717 [exp] 207 / 6e-61 AT5G65940 565 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Lus10010685 [exp] 188 / 4e-55 AT4G31810 575 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10007422 [exp] 187 / 1e-54 AT4G31810 568 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10020758 [exp] 180 / 2e-52 AT1G06550 602 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10007334 [exp] 178 / 2e-51 AT1G06550 595 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10028182 [exp] 157 / 2e-44 AT3G60510 453 / 6e-160 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Lus10042883 [exp] 151 / 2e-42 AT4G31810 394 / 4e-137 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10010994 [exp] 79 / 7e-16 AT4G16800 351 / 2e-121 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G155700 [exp] 633 / 0 AT4G13360 611 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.006G156350 [exp] 631 / 0 AT4G13360 608 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.014G179000 [exp] 204 / 2e-61 AT5G65940 556 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.001G156900 [exp] 183 / 2e-53 AT3G60510 432 / 9e-151 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.006G277300 [exp] 179 / 5e-52 AT5G65940 397 / 1e-137 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.010G170200 [exp] 177 / 8e-51 AT5G65940 388 / 6e-133 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004200 [exp] 174 / 4e-50 AT5G65940 430 / 2e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004150 [exp] 173 / 9e-50 AT5G65940 428 / 6e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004100 [exp] 172 / 1e-49 AT5G65940 393 / 6e-136 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G018800 [exp] 166 / 7e-47 AT4G31810 565 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00378 [flax] [poplar] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Lus10019396 pacid=23181563 polypeptide=Lus10019396 locus=Lus10019396.g ID=Lus10019396.BGIv1.0 annot-version=v1.0 ATGAAGAGCATCTTCTCGGCATCACAACTCTCCAGATCAGCGGCTCTCTTCACCACCACTCGCTCTCCTCGACACGTTTCACTCCGCCTCTTCCTCTCCT GTAACTCCGCCGCTGTTCCCACTCGAAGCCTGGCGGCGATGGCGGCGTCTGCTGCTGGCGAGTTCGTCAAGGGGAGTGTTCATCCCAATGGCGTCGCTGT CATCACTCTCGACCGTCCCAAAGCCCTCAACGCCATGAACTTAGATATGGACATTCGATACAAGAGTTTCCTTGATGAATGGGAGGCGGATCCAAACGTG AAATGCGTTCTTGTGGAAGGTAGCACTCCTCGGGCTTTCTGTGCAGGTATGGATATTAAAGGGGTTGTCGCTGAAATTCACAAGGACAAAAATACGCCTC TTGTGCAGAAGGTTTTCACGGCAGAATACACTCTGATATGTAGAATTGCTGAATACAAGAAACCATATATAGCTTTTATGGATGGGATAACAATGGGATT TGGAATTGGTCTATCTGGACATGGTCGCTACCGAATTATAACAGAGAGGACGCTGCTTGCTATGCCTGAAAATGGGATTGGCTTGTTTCCTGATGTGGGA TTTTCGTATATAGCAGCACAAAGTCCAGGAGAAGGATCAGTTGGTGCTTATCTTGGATTGACAGGAAAGAGGGTTTCTTCTCCCTCTGATGCATTGTTTG TTGGCCTTGGGACGCACTACGTCCCATCTGGAAACTTGAGCTCATTGAAGGACGAGCTTTTGGCTATTAACTTCTCAGAAGACCCGCATGATGAAGTCAA AGGACTTCTAGCAAAGTACAAGCATGAGCCTGATTCCGATGCCCAATTGAAATTGCTTTTACCGCGAATCATTTCAACCTTTGGTGGACATAGGTCAGTG AAGGAGATTGCTGAAGAGCTCAAACAGCATAAACAGAGTGCTGATGCTAAAGTGTCCGAGTGGGCCACTGAAGCTCTTCAAGGTCTTGAAAAGGGTGCAC CTTTTTCTCTTTGCTTGACACAAAGCTATTTCTCTAAAGTTGCATCTGCCTGTGGAAGAACCTCCAATGACTTATCAACACTAAATGGTGTAATGAAAAC CGAGTATCGCATCGCGTTGAGATCTTCCCTGCGTAACGATTTTGCGGAAGGAGTCAGGGCCGTTTTGGTGGACAAAGATCAGAATCCCAAGTGGGATCCG GCAAGCTTGGAAGAAGTTGAACAGAATGAAGTGGAGTCTCTGTTTCAACCGTTGGGTTCAGAAACTCCGGCGCTGGCCGTTTAA
AA sequence Show only first row Show all	>Lus10019396 pacid=23181563 polypeptide=Lus10019396 locus=Lus10019396.g ID=Lus10019396.BGIv1.0 annot-version=v1.0 MKSIFSASQLSRSAALFTTTRSPRHVSLRLFLSCNSAAVPTRSLAAMAASAAGEFVKGSVHPNGVAVITLDRPKALNAMNLDMDIRYKSFLDEWEADPNV KCVLVEGSTPRAFCAGMDIKGVVAEIHKDKNTPLVQKVFTAEYTLICRIAEYKKPYIAFMDGITMGFGIGLSGHGRYRIITERTLLAMPENGIGLFPDVG FSYIAAQSPGEGSVGAYLGLTGKRVSSPSDALFVGLGTHYVPSGNLSSLKDELLAINFSEDPHDEVKGLLAKYKHEPDSDAQLKLLLPRIISTFGGHRSV KEIAEELKQHKQSADAKVSEWATEALQGLEKGAPFSLCLTQSYFSKVASACGRTSNDLSTLNGVMKTEYRIALRSSLRNDFAEGVRAVLVDKDQNPKWDP ASLEEVEQNEVESLFQPLGSETPALAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13360			ATP-dependent caseinolytic (Cl...		Lus10019396 [exp]	0	1
AT1G16210			unknown protein		Lus10022649 [exp]	1.7	0.9020
					Lus10010972 [exp]	5.3	0.8550
AT5G60800			Heavy metal transport/detoxifi...		Lus10021432 [exp]	7.2	0.8468
AT5G62270			unknown protein		Lus10034311 [exp]	12.5	0.7761
AT1G76060		EMB1793	EMBRYO DEFECTIVE 1793, LYR fam...		Lus10005621 [exp]	13.8	0.8321
AT1G30480		DRT111	DNA-DAMAGE-REPAIR/TOLERATION P...		Lus10038451 [exp]	14.5	0.8221
AT3G06780			glycine-rich protein (.1)		Lus10037706 [exp]	14.7	0.8458
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Lus10030192 [exp]	14.9	0.8545
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Lus10021920 [exp]	17.3	0.8394
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016497 [exp]	17.5	0.8171

Compare expression of checked genes

Lus10019396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.