Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19950 258 / 1e-80 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3) AT5G63540 50 / 3e-06 BLAP75, ATRMI1 RECQ MEDIATED INSTABILITY 1, Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043254 [exp] 763 / 0 AT5G19950 285 / 4e-91 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3) Lus10000162 [exp] 141 / 5e-40 AT5G19950 63 / 2e-12 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3) Lus10022440 [exp] 49 / 9e-06 AT5G63540 452 / 1e-151 RECQ MEDIATED INSTABILITY 1, Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2) Lus10016747 [exp] 45 / 0.0001 AT5G63540 297 / 5e-94 RECQ MEDIATED INSTABILITY 1, Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G073100 [exp] 379 / 7e-127 AT5G19950 274 / 6e-87 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3) Potri.015G100200 [exp] 49 / 7e-06 AT5G63540 468 / 3e-158 RECQ MEDIATED INSTABILITY 1, Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF08585 [flax] [poplar] RMI1_N RecQ mediated genome instability protein
Representative CDS sequence Show only first row Show all	>Lus10019397 pacid=23181500 polypeptide=Lus10019397 locus=Lus10019397.g ID=Lus10019397.BGIv1.0 annot-version=v1.0 ATGGAGGGAGAGAGCTCGAGGTCGGCCAAAATTATAGAGGATGTCATTCAAACCCTAACCACCAGAGGTTGGTGTTTCGGCGATCTCGATCGAGTCAAGG CTATTGCGTTTGTCCAATCGGGTTTATCCGACGATGGCAAACCTTCCACCATCGCCGATTCCGTCGAATCCGAACTCCTCAACTTGGACCTTAGGTCCTT CGGCGGCAAGTCGTTGCCCGAAGCCAGCCTTTTACCCAAAGCTTCCCATCTCCAAGGTCGCAAAGTTCTTCAGATATGTTCGGTGAGAGACATAGCTTTA AGTACCATTGACGCCTTTTCAAGCTCCGGTCACCGGCGCCTCCTTAAGCTTGCCCTCACCGACGGACACACTGAGATACCTGCGATTGAGTACTCTCATT TGTCCTCTATCCCAAGCGATGTTGCTCCCGGTTACAAGATTCTTCTAGAGAACAAGGCTCCAATTCATAGTGGTATACTGTGCTTAAACCCTATAGTGGT GACTCCGATTGGAGGCATTGTTCAATCGCTTCATGAAGAATGGCGTATGAATCAGAAGTATGCAGCTTTCGCACGTTCATCAATGAGGCCGAGTCAGGAA ATCGGTGTCGCTGGTCCTCCTGCTTTTGAGAAGTTGCAAACTCGAGCTTCTTTTATTCGTCCATCATCAAGTAACAGGGTTTATGATTACTTCCAGGCAA TTTCTAAAAGCAGCATTCTTGCAGCTGAAGAAATTGTACGTAAAGGTGAAGTCAGGTTAGATGATGCTCAAAATAGACCAGAACATTTTGTAGACAACCC AAAAACTGTGTCCACTGAGGAGAATGCACGGTGGAAGCCACTCCGAAGTGCAATGAGACCGAATGAAGAAAACTTTGCGTCTACCTCAAGGTCCACCTTC CCTTCCGCTGCTGAGAATGTTCAAAACAATGCAAATACTACCAGCACTAGCAGTAACATGAAAACAACTGCACTTGCAGAAAGTAAGGAAGGAAAGACGA GCAACTCGTACAGTAGGCCAAAGGAAGTAGTTGAATCAGCACCAGTGCAAAATCAAGCGGCTGCTCAAAAACTCCTCCAAAAGATGGCTCCTCAAAACCA GTATGATCAGCGGTACAGAGGCCGAGGCCGAGGACGTAGACAACACGGGGGAAGGGGTAGACATGATGACGAACCTCAGACTTGGACATTAGAGGAGTGG CAAAACAGGAACGATGGAGCTAAGCCGCGGATGGGAGGAAATGAGTTTCCAGATACTAGTAATGACGAAGATTTAGCATGGCAGTTACAAAACCAGCTCG CTATGGAAGATTCTCATGTACGGAGAGGAGGAACACAGGGCACTGTGGCAACAGACATTCGTATGTCCATGTTTAGCTTCGAAAGAGACGAGACGGGTTA TGACATGGAGCGTGGAGGTAGAGGCAGAGGCAGAGGTAGGGGGAGAGGAAGAGGAAGAGGTAGACGCGGTTAA
AA sequence Show only first row Show all	>Lus10019397 pacid=23181500 polypeptide=Lus10019397 locus=Lus10019397.g ID=Lus10019397.BGIv1.0 annot-version=v1.0 MEGESSRSAKIIEDVIQTLTTRGWCFGDLDRVKAIAFVQSGLSDDGKPSTIADSVESELLNLDLRSFGGKSLPEASLLPKASHLQGRKVLQICSVRDIAL STIDAFSSSGHRRLLKLALTDGHTEIPAIEYSHLSSIPSDVAPGYKILLENKAPIHSGILCLNPIVVTPIGGIVQSLHEEWRMNQKYAAFARSSMRPSQE IGVAGPPAFEKLQTRASFIRPSSSNRVYDYFQAISKSSILAAEEIVRKGEVRLDDAQNRPEHFVDNPKTVSTEENARWKPLRSAMRPNEENFASTSRSTF PSAAENVQNNANTTSTSSNMKTTALAESKEGKTSNSYSRPKEVVESAPVQNQAAAQKLLQKMAPQNQYDQRYRGRGRGRRQHGGRGRHDDEPQTWTLEEW QNRNDGAKPRMGGNEFPDTSNDEDLAWQLQNQLAMEDSHVRRGGTQGTVATDIRMSMFSFERDETGYDMERGGRGRGRGRGRGRGRGRRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19950			Domain of unknown function (DU...		Lus10019397 [exp]	0	1
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Lus10038853 [exp]	3.7	0.9207
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10024052 [exp]	6.9	0.8985
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Lus10002823 [exp]	7.5	0.9007
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	12.0	0.9057
AT3G63510			FMN-linked oxidoreductases sup...		Lus10016407 [exp]	13.7	0.8846
AT2G25970			KH domain-containing protein (...		Lus10023854 [exp]	14.3	0.8944
AT2G27730			copper ion binding (.1)		Lus10020624 [exp]	14.5	0.8920
AT3G06790			plastid developmental protein ...		Lus10016825 [exp]	17.0	0.8953
AT1G11480			eukaryotic translation initiat...		Lus10018497 [exp]	18.5	0.8884
AT2G25970			KH domain-containing protein (...		Lus10013531 [exp]	21.2	0.8844

Compare expression of checked genes

Lus10019397 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.