Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13370 591 / 0 Plant protein of unknown function (DUF936) (.1) AT3G14170 161 / 2e-42 Plant protein of unknown function (DUF936) (.1) AT1G08760 152 / 3e-38 Plant protein of unknown function (DUF936) (.1) AT1G23790 136 / 1e-33 Plant protein of unknown function (DUF936) (.1) AT1G70340 131 / 3e-32 Plant protein of unknown function (DUF936) (.1) AT3G19610 107 / 5e-24 Plant protein of unknown function (DUF936) (.1) AT2G31920 92 / 3e-19 Plant protein of unknown function (DUF936) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043255 [exp] 1144 / 0 AT4G13370 652 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10008138 [exp] 155 / 9e-41 AT3G14170 350 / 8e-117 Plant protein of unknown function (DUF936) (.1) Lus10013177 [exp] 155 / 4e-40 AT3G14170 459 / 9e-158 Plant protein of unknown function (DUF936) (.1) Lus10013007 [exp] 141 / 6e-38 AT1G23790 253 / 6e-82 Plant protein of unknown function (DUF936) (.1) Lus10026806 [exp] 151 / 7e-38 AT1G08760 732 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10029158 [exp] 140 / 5e-35 AT1G70340 477 / 2e-164 Plant protein of unknown function (DUF936) (.1) Lus10030619 [exp] 135 / 1e-33 AT1G23790 393 / 5e-132 Plant protein of unknown function (DUF936) (.1) Lus10030870 [exp] 135 / 3e-33 AT1G23790 391 / 6e-131 Plant protein of unknown function (DUF936) (.1) Lus10012367 [exp] 108 / 3e-24 AT3G19610 174 / 2e-46 Plant protein of unknown function (DUF936) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G072500 [exp] 751 / 0 AT4G13370 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.003G070200 [exp] 166 / 8e-44 AT3G14170 458 / 2e-157 Plant protein of unknown function (DUF936) (.1) Potri.017G026200 [exp] 158 / 3e-40 AT1G08760 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.007G131600 [exp] 155 / 3e-39 AT1G08760 674 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.008G192300 [exp] 149 / 8e-38 AT1G23790 572 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.009G024800 [exp] 127 / 2e-30 AT2G31920 293 / 1e-91 Plant protein of unknown function (DUF936) (.1) Potri.001G294600 [exp] 104 / 6e-23 AT3G19610 177 / 2e-47 Plant protein of unknown function (DUF936) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06075 [flax] [poplar] DUF936 Plant protein of unknown function (DUF936)
Representative CDS sequence Show only first row Show all	>Lus10019398 pacid=23181622 polypeptide=Lus10019398 locus=Lus10019398.g ID=Lus10019398.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTGACTCCTGGAATCCTCCTCAAGCTCCTCCAGACCATGAACTCCACCACACGCGTCACGGGCGACCACCGCTCCCCTCTACTCCAAGTCA TCGGCATAGTCCCAGCCCTCGCAGGATCCTCCGACCTCTGGCCTAACCACGGCTTCTACGTCCAGCTCTCCGACTCCCTCAACTCCACCTACGTCTCCCT CTCCGACCACGACGTCGACCTCATCCTCTCCAACCGCCTCCAGCTCGGCCAGTTCGTCTACGTCGACCGCTTCCAGCCTGACTCCCCTGTTCCTAGGGCT TGCGGAATCCGCACCATCGCCGGCCGCCACGCTTTTCTCGGAACTCCCGAGCCGCTAATCGCTCGGATCTCGCCTTCCAAGAAGGAATTCGTCATTCAAC CTGTGGAGACCAACTCGGATTCTCCGTCCTCCGTGGATCCGATTGCAGCCTACTTGTCCGTCAACAAGAAATCGAGCGATTCAGCTACTAAGATCGAGAG CAAGGAAGTTACTACGACTGATACCAGAAAGTTCGAGAAGAGCGTTAGGAAAGTTGTCAGGCAACCTCTTGCGCCGGTAGACAACACAAATTCGAATCCC AAGGAAATTAAACCGCCGCAGAGGTTCTCTTCTCCTGCTGGAGCGAAGAGATCTGTTTCCGCCGGAAAGAAGAACTTGGCCGCACCGGTGGAGCGTGATC CGTCTCCGGCCGGGAAAGGGAAGAGGTCGTCTTCTCCGGCTCCGTCCAAATGCGTAGTGCCGAGTCTTGCGGCAGCAAAGGAGGAGAACAGGAGAGTGGC GAGGGAGCCGGCGATTATTGTTCCGTCAAGGTACAGACAGCCGTCCCCGACTGGGAGGAGGCATGCTTCTCCGAACCCTAGAAGAACTTCATTATCCCCA GGAAGGAGGCTGTCCGGAGTGAAATTTTCATCTCCGATGGTGGCGGATTCGACAGGAAGGAAGAAAATTGCTTCAATTGTCGCAGGGATTTCCAAAATCT CCGAATCACTTGTTGGATCTGGAAAGAGTAGCAGAAAGAATTGGGAAGAAACACCTCCTGCCGCGGCAATGACGGCGGCTGGGGATACGAAAGAAAAGGG GGATGCCAAGAAGAAAGTGGATATGAAGTCGATTCTGCGGACACAGGCAGCATTATCGAGGCGTCTCAGTGATGCTGGTCGCCATTCGAATCAAGAAGAT GATGATGATGATGATTATTATTATTCCACGAGTAGCGAAAAAGGAAATCTTTATTCTCCTGGGAGATCATCTACTACTGATAATGAGAAGCCTGCAGGAG CTATTGGATTCACTGTACATGAGAAGAAATGGACTGACGGAAGCGTCCCACTGGATGCAGTTTCTTCAGACCTTGTCCTGCTTACAAAGGAGGCTATTCA AAGGCGAGTTCTAGCATCTACAGCTGCAGCTGAAGCTCTAGAAGAAGCCATTGCCACTGAATCTATCGTCAGATCTGTAAGCATATTCTCAGACCTCCGA TCGTCAACAACCAAAGCTAAGGCAGAGAATCGCTCACCCACCATAGACAGATTCTTCTCTCTGTACGACGATGTGGAGAAGTATGCACAGAGTGCTCAAT CAGTCGCCACCAGCCACTCTTCTTCGTCTGGTAAGGAAACCATCCAGACCGAACATTCCAAAGCAGCTTCATTATGGGTTGAAGCTGCTCTAGCAACAGA CCTCGAGATTGTCATGGTTTTGAACAGCAAGATCAGTGCTGAAAACCCTCCTCCTCCGCCTCCCACTTCTCTTCGGAGAAGTCTGTCGAAAAGAAGAGGA AGCTCATCATCATCTCCATCCCAAACTGCTGGCACTCCAGAAGCAGGGAAAGGAGGTTGTTGTTGGACAAGATGCAATGGGATGAGTGAAACTGTGGAGC TGGCAATGAAGCTGCAAATGGAGATGCAGGTTTGGTTCGTGAGGTTTGTGGAGGAATCATTAGACAGTGGGTTTCGTTCGCTGGGTCCGGTCAACGCTGG ATCTATTGCAGCTATCTTATCTCAGCTGAAGAGAGTCAACGGTTGGCTGGATCGTGTGTCGGCCAAAGGTGAGCAGGGTCTTATAGATGAGATCGAGAAG TTGAAGAAGAAGATTTATGGGTTCGTTATTCAGCATGTTGGGGCTGCCTTTTGA
AA sequence Show only first row Show all	>Lus10019398 pacid=23181622 polypeptide=Lus10019398 locus=Lus10019398.g ID=Lus10019398.BGIv1.0 annot-version=v1.0 MASLTPGILLKLLQTMNSTTRVTGDHRSPLLQVIGIVPALAGSSDLWPNHGFYVQLSDSLNSTYVSLSDHDVDLILSNRLQLGQFVYVDRFQPDSPVPRA CGIRTIAGRHAFLGTPEPLIARISPSKKEFVIQPVETNSDSPSSVDPIAAYLSVNKKSSDSATKIESKEVTTTDTRKFEKSVRKVVRQPLAPVDNTNSNP KEIKPPQRFSSPAGAKRSVSAGKKNLAAPVERDPSPAGKGKRSSSPAPSKCVVPSLAAAKEENRRVAREPAIIVPSRYRQPSPTGRRHASPNPRRTSLSP GRRLSGVKFSSPMVADSTGRKKIASIVAGISKISESLVGSGKSSRKNWEETPPAAAMTAAGDTKEKGDAKKKVDMKSILRTQAALSRRLSDAGRHSNQED DDDDDYYYSTSSEKGNLYSPGRSSTTDNEKPAGAIGFTVHEKKWTDGSVPLDAVSSDLVLLTKEAIQRRVLASTAAAEALEEAIATESIVRSVSIFSDLR SSTTKAKAENRSPTIDRFFSLYDDVEKYAQSAQSVATSHSSSSGKETIQTEHSKAASLWVEAALATDLEIVMVLNSKISAENPPPPPPTSLRRSLSKRRG SSSSSPSQTAGTPEAGKGGCCWTRCNGMSETVELAMKLQMEMQVWFVRFVEESLDSGFRSLGPVNAGSIAAILSQLKRVNGWLDRVSAKGEQGLIDEIEK LKKKIYGFVIQHVGAAF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13370			Plant protein of unknown funct...		Lus10019398 [exp]	0	1
AT4G13370			Plant protein of unknown funct...		Lus10043255 [exp]	1.4	0.9800
AT5G01420			Glutaredoxin family protein (....		Lus10028742 [exp]	3.0	0.9685
AT5G27550			P-loop containing nucleoside t...		Lus10029914 [exp]	3.5	0.9767
AT4G02800			unknown protein		Lus10014668 [exp]	4.9	0.9753
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10028434 [exp]	5.7	0.9729
AT3G15550			unknown protein		Lus10035906 [exp]	6.0	0.9692
AT4G35730			Regulator of Vps4 activity in ...		Lus10041836 [exp]	6.2	0.9652
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10020755 [exp]	6.5	0.9388
AT4G35730			Regulator of Vps4 activity in ...		Lus10028383 [exp]	7.5	0.9638
AT1G70340			Plant protein of unknown funct...		Lus10029158 [exp]	7.7	0.9631

Compare expression of checked genes

Lus10019398 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.