Plant FIBer expression Database

Lus10019399 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G02145 642 / 0 EBS4, ALG12 EMS-MUTAGENIZED BRI1\(BRASSINOSTEROID INSENSITIVE 1\) SUPPRESSOR 4, homolog of asparagine-linked glycosylation 12 (.1.2.3.4)
AT5G14850 49 / 8e-06 Alg9-like mannosyltransferase family (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043256
[exp]
781 / 0 AT1G02145 669 / 0.0 EMS-MUTAGENIZED BRI1\(BRASSINOSTEROID INSENSITIVE 1\) SUPPRESSOR 4, homolog of asparagine-linked glycosylation 12 (.1.2.3.4)
Lus10033296
[exp]
51 / 1e-06 AT5G14850 697 / 0.0 Alg9-like mannosyltransferase family (.1.2)
Lus10033341
[exp]
51 / 2e-06 AT5G14850 701 / 0.0 Alg9-like mannosyltransferase family (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G139200
[exp]
650 / 0 AT1G02145 706 / 0.0 EMS-MUTAGENIZED BRI1\(BRASSINOSTEROID INSENSITIVE 1\) SUPPRESSOR 4, homolog of asparagine-linked glycosylation 12 (.1.2.3.4)
Potri.018G098700
[exp]
45 / 0.0001 AT5G14850 720 / 0.0 Alg9-like mannosyltransferase family (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0111 GT-C PF03901 Glyco_transf_22 Alg9-like mannosyltransferase family
Representative CDS sequence
>Lus10019399 pacid=23181471 polypeptide=Lus10019399 locus=Lus10019399.g ID=Lus10019399.BGIv1.0 annot-version=v1.0
ATGAGTATTTCTAGGCCCGGTCTAGGGCTTGGCCGGCCCTCCCTTGATCCATCGCTGTCGGCAGTGGTTGCTGGGATCGATGGGCTATCTGCTGAAGGTT
GCGCAGGTGGGAGTCTTAAGGTTCCGGCGTTGGCAGCGGACGTGGAACTCAGCTGTCCCAGCCGTGCTCCGCGAGCGGCGTCGGTTGTGGACGTGAGAGT
CCCCACTGTCACCGTATTCATCGATGACTGCTCTGAGCCAAGCTATGACTTAATGTTAGGATCGATAGCTGCGTTTTATGCGCTTATGGCGCCGTACACC
AAGGTTGAAGAAAGCTTCAACGTTCAGGCGATGCATGACATTCTTTTCCATCGCCATCACTTGGATAGTTATGATCACTTGGAGTTCCCTGGCGTCGTTC
CTCGCACTTTCATTGGAGCATTGCTGATTTCAGCATTAGCATCCCCCATACTTATGGCAATTAGCTTCCTGCAGTTGCCAAAACTTTATGCACTCATCGC
AGTTCGCTTGGCATTGGGTTCCATGGTATTAGGAACCCTGAGGTTCTTTCGTGTTCAGGTTAGGAAGAAGTTTGGTCATCAAGTGGAATGGTTCTTTGTG
GTACTAACTGCGGTTCAGTTTCACTTGCTGTTCTATTGCACGCGACCACTTCCTAATATTTTTGCTTTGGGTTTAGTCAACTTGGCTTATGGGTATTGGC
TCAAGGGGAAAAATTATGCTGCCCTGAATTGTCTGATCTTTGCTGCAGTAGTGTTCAGATGTGACATGCTGTTACTTCTTGGTCCTCTTGGCTTGCAGCT
TTTGTTGGTTAGATCTGTCTCAGTATTTGGTGGAATCAAATACTGCCTAGGCATTGCATTATTGTCGATAGGTCTTACTATGGCCATTGACTCAATTATG
TGGAGACGTATAGTGTGGCCAGAATTTGAAGTATTTTGGTTCAATTCTGTTCTAAACCGAAGTTCTGAGTGGGGTACACATTCCCTCCATTGGTACTTCA
CTTCAGCTCTCCCACGTTCGCTACTTGCTGCATATCCTCTTTCTATGCTTGGAGTTATACTAGATCGAAGAGTTCGGCATTTTGTTTTTCCGGTTGTCGT
ATTCATTTCCCTTTACTCCAAGCTTCCACACAAAGAACTTCGATTCATCATTAGCTCTTTTCCAATGTTTAACCTTTCTGCAGCAGTTGCAGCAAGCAGA
ATCTACAACAATAGGAAGAAAACACTATGGAAGTTGTTTAATCTTATCATGTTGGGACTATTCTTGATCAGTCTAGGGTGTACTGCAGTGACATTCATGG
CATCTTATGAAAATTATCCCAGTGGTCATGCATTAATGGAGCTGCACCAGATTGGTGATATTGTGGACAAGGGTCAAGTGTTGGTTCATATTGATACCTT
CTCGGCCATGAATGGAATATCACGGTTTTCAGAAAATGGTCCCACGTGGAGGTACTCTAAAGAAGAGCGGATTCCTCTTGAAGAGTACAAGCTCAGAAAT
TTTACATATCTCGTAAGTGAGCATCCAGATGTTGATGGGTACAAATGTTTATTTGCTACGAATGGCTTCTCAAGGATTCTCCTTAAACGTGGCTTCCCTC
CCATTTCCCTGGTGAAGGAGGCTAAGGTTTACATTCATGGGGCTATTGCAGAGAAACAATGGCGGGGATGCTAG
AA sequence
>Lus10019399 pacid=23181471 polypeptide=Lus10019399 locus=Lus10019399.g ID=Lus10019399.BGIv1.0 annot-version=v1.0
MSISRPGLGLGRPSLDPSLSAVVAGIDGLSAEGCAGGSLKVPALAADVELSCPSRAPRAASVVDVRVPTVTVFIDDCSEPSYDLMLGSIAAFYALMAPYT
KVEESFNVQAMHDILFHRHHLDSYDHLEFPGVVPRTFIGALLISALASPILMAISFLQLPKLYALIAVRLALGSMVLGTLRFFRVQVRKKFGHQVEWFFV
VLTAVQFHLLFYCTRPLPNIFALGLVNLAYGYWLKGKNYAALNCLIFAAVVFRCDMLLLLGPLGLQLLLVRSVSVFGGIKYCLGIALLSIGLTMAIDSIM
WRRIVWPEFEVFWFNSVLNRSSEWGTHSLHWYFTSALPRSLLAAYPLSMLGVILDRRVRHFVFPVVVFISLYSKLPHKELRFIISSFPMFNLSAAVAASR
IYNNRKKTLWKLFNLIMLGLFLISLGCTAVTFMASYENYPSGHALMELHQIGDIVDKGQVLVHIDTFSAMNGISRFSENGPTWRYSKEERIPLEEYKLRN
FTYLVSEHPDVDGYKCLFATNGFSRILLKRGFPPISLVKEAKVYIHGAIAEKQWRGC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G02145 EBS4, ALG12 EMS-MUTAGENIZED BRI1\(BRASSINO... Lus10019399
[exp]
0 1
AT5G39940 FAD/NAD(P)-binding oxidoreduct... Lus10001121
[exp]
1.7 0.8879
AT1G63110 GPI transamidase subunit PIG-U... Lus10029590
[exp]
3.6 0.8387
AT4G29540 AtLpxA bacterial transferase hexapept... Lus10032684
[exp]
4.5 0.8410
AT2G06025 Acyl-CoA N-acyltransferases (N... Lus10021559
[exp]
5.3 0.8514
AT3G56160 Sodium Bile acid symporter fam... Lus10043443
[exp]
6.5 0.8490
AT2G31170 FIONA, SYCOARAT... cysteinyl t-RNA synthetase, FI... Lus10001953
[exp]
6.7 0.8419
AT3G21480 BRCT domain-containing DNA rep... Lus10038633
[exp]
7.6 0.8671
AT5G14030 translocon-associated protein ... Lus10041525
[exp]
8.4 0.7819
AT3G20650 mRNA capping enzyme family pro... Lus10027333
[exp]
8.9 0.8350
AT5G01510 RUS5 ROOT UV-B SENSITIVE 5, Protein... Lus10027788
[exp]
9.5 0.8501

Lus10019399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.