Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13290 539 / 0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) AT3G27540 457 / 3e-161 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT1G12990 446 / 9e-157 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT5G14480 444 / 3e-156 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT1G67880 443 / 9e-156 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT3G01620 415 / 8e-145 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT3G26445 78 / 2e-17 beta-1,4-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043257 [exp] 744 / 0 AT2G13290 538 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Lus10038093 [exp] 671 / 0 AT2G13290 533 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Lus10006474 [exp] 443 / 1e-155 AT1G12990 657 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10006475 [exp] 442 / 4e-155 AT1G12990 654 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10035231 [exp] 435 / 2e-152 AT3G27540 672 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10032088 [exp] 434 / 3e-152 AT3G27540 676 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10022281 [exp] 433 / 6e-152 AT3G27540 675 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10003666 [exp] 430 / 1e-150 AT3G27540 670 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G066700 [exp] 585 / 0 AT2G13290 526 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Potri.018G127900 [exp] 578 / 0 AT2G13290 530 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Potri.001G343600 [exp] 453 / 1e-159 AT3G27540 627 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Potri.008G186000 [exp] 444 / 6e-156 AT1G12990 691 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Potri.010G046900 [exp] 442 / 2e-155 AT1G12990 675 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04724 [flax] [poplar] Glyco_transf_17 Glycosyltransferase family 17
Representative CDS sequence Show only first row Show all	>Lus10019400 pacid=23181608 polypeptide=Lus10019400 locus=Lus10019400.g ID=Lus10019400.BGIv1.0 annot-version=v1.0 ATGGCACCTCGAGCTGTTCGCACCTCCACGAAAAGGCTACCAAGGAAGCTTGTATTCATGATATTCTTGATACTAGTCCCCATGTGTGTCATCGGAATCG TCACTCATTTCCATACAATCTCGTATCTTTTCCGACCGCTTTGGGACAGTCCTCCTCGTCCATTCCAAAAGATACCTCACTATTACGCAGAGAACGTGCC AATGGAACACCTCTGCAGCCTCCACGGCTGGAGCATCCGCAGGGAGCCTCGCCGTGTCTTTGATGGCATCATCTTCAGCAACGAGCTGGACCTTCTCGAG ATAAGATGGCGCGAGCTGCATCGTTACGTCACCAAGTTTGTGATCCTCGAGTCCAACACCACCTTCACAGGGATAGCAAAGCCTCTCTTCTTCGACTCAA ACAGGCCCCGGTTCGACTTTGCAGCAGACAAGATAGTCCATGGTATATTCTCGGGTCGAATGGCTGAACCTGGATCCCAAGAAGACCCCTTTGTGCTCGA GTCGGAGCAGCGAGCGTCCATGAATGGCTTGCTTCGCCGTGCAGGAGTTTCCAACGGGGACTTAGTCATCATGTCGGACACAGACGAGATTCCAAGCCCT CATACTGTGAAATTGCTACAGTGGTGCGATGGAATACCACCCGTGTTACATCTCGAGATGAGGAACTACATATACTCGTTTGAATTCCCCGTGGATAGCA GCCATTGGAGGGCAACGGTGCAGACTTATAGCCCTTGGACAAGATACAGGCACTCGCGGCAATCCGATGTTATACTATCGGACGCTGGATGGCACTGCAG CTTCTGCTTTCGGAAGCTTGAGGAGTTTGTGTTCAAGATGAAGGCGTACAGCCACGCTGACCGGGTAAGGAGACGGGATTTTCTTAACCACCAGAGGATT CAGAAACTGATATGCAAAGGGGATGATTTGTTTGACATGCTACCTGAAGAGTACACATTCAAAGAGCTGATTAAGAAGATGGGGTCAATCCCACATTCAG CTTCTGGGGTTCACCTTCCTGCTTACTTGATAGAGAATGCAGAGACGTTTAGGTTTCTTCTTCCTGGAGGGTGTCTAAGAACAAAGTATGCTGCTTGA
AA sequence Show only first row Show all	>Lus10019400 pacid=23181608 polypeptide=Lus10019400 locus=Lus10019400.g ID=Lus10019400.BGIv1.0 annot-version=v1.0 MAPRAVRTSTKRLPRKLVFMIFLILVPMCVIGIVTHFHTISYLFRPLWDSPPRPFQKIPHYYAENVPMEHLCSLHGWSIRREPRRVFDGIIFSNELDLLE IRWRELHRYVTKFVILESNTTFTGIAKPLFFDSNRPRFDFAADKIVHGIFSGRMAEPGSQEDPFVLESEQRASMNGLLRRAGVSNGDLVIMSDTDEIPSP HTVKLLQWCDGIPPVLHLEMRNYIYSFEFPVDSSHWRATVQTYSPWTRYRHSRQSDVILSDAGWHCSFCFRKLEEFVFKMKAYSHADRVRRRDFLNHQRI QKLICKGDDLFDMLPEEYTFKELIKKMGSIPHSASGVHLPAYLIENAETFRFLLPGGCLRTKYAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Lus10019400 [exp]	0	1
AT2G04400			Aldolase-type TIM barrel famil...		Lus10006354 [exp]	3.5	0.9692
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10020803 [exp]	4.4	0.9764
AT1G80530			Major facilitator superfamily ...		Lus10017480 [exp]	4.5	0.9698
AT3G47930		ATGLDH	"L-galactono-1,4-lactone dehyd...		Lus10035411 [exp]	6.6	0.9556
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007385 [exp]	6.7	0.9621
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10012157 [exp]	7.4	0.9679
AT3G54250			GHMP kinase family protein (.1...		Lus10034147 [exp]	9.2	0.9609
AT5G62280			Protein of unknown function (D...		Lus10027191 [exp]	9.8	0.9687
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024616 [exp]	10.1	0.9656
AT3G44220			Late embryogenesis abundant (L...		Lus10043410 [exp]	12.0	0.9639

Compare expression of checked genes

Lus10019400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.