Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80490 1267 / 0 TPR1 TOPLESS-related 1 (.1.2) AT3G15880 1046 / 0 WSIP2, TPR4 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) AT1G15750 989 / 0 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) AT3G16830 843 / 0 TPR2 TOPLESS-related 2 (.1) AT5G27030 817 / 0 TPR3 TOPLESS-related 3 (.1.2) AT2G25420 200 / 3e-53 transducin family protein / WD-40 repeat family protein (.1) AT2G43770 54 / 3e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 54 / 4e-07 PRL1 pleiotropic regulatory locus 1 (.1) AT3G16650 54 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26060 52 / 9e-07 EMB1345 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006650 [exp] 1754 / 0 AT1G15750 1593 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10038094 [exp] 1617 / 0 AT1G80490 1525 / 0.0 TOPLESS-related 1 (.1.2) Lus10043258 [exp] 1270 / 0 AT3G15880 1776 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10011481 [exp] 1008 / 0 AT1G15750 2011 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10023119 [exp] 965 / 0 AT1G15750 1959 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10011905 [exp] 880 / 0 AT3G15880 920 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10020668 [exp] 821 / 0 AT5G27030 1717 / 0.0 TOPLESS-related 3 (.1.2) Lus10029876 [exp] 819 / 0 AT5G27030 1722 / 0.0 TOPLESS-related 3 (.1.2) Lus10001924 [exp] 384 / 4e-116 AT1G15750 1006 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G257900 [exp] 1159 / 0 AT1G80490 1466 / 0.0 TOPLESS-related 1 (.1.2) Potri.018G023900 [exp] 1154 / 0 AT1G80490 1420 / 0.0 TOPLESS-related 1 (.1.2) Potri.006G066800 [exp] 1121 / 0 AT3G15880 1689 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.018G128000 [exp] 1114 / 0 AT3G15880 1650 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.003G030000 [exp] 1003 / 0 AT1G80490 1922 / 0.0 TOPLESS-related 1 (.1.2) Potri.001G200500 [exp] 954 / 0 AT1G15750 1922 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.013G081300 [exp] 911 / 0 AT1G15750 1540 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.005G021700 [exp] 850 / 0 AT5G27030 1714 / 0.0 TOPLESS-related 3 (.1.2) Potri.013G012100 [exp] 847 / 0 AT5G27030 1698 / 0.0 TOPLESS-related 3 (.1.2) Potri.018G023800 [exp] 724 / 0 AT1G80490 1195 / 0.0 TOPLESS-related 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10019401 pacid=23181524 polypeptide=Lus10019401 locus=Lus10019401.g ID=Lus10019401.BGIv1.0 annot-version=v1.0 ATGTCTTCGCTCAGTAGGGAGCTTGTGTTCCTCATACTCCAGTTCCTGGACGAGGAAAAATTCAAGGAGACTGTGCACAAATTGGAGCAGGAGTCTGGGT TTTATTTCAACATGCGGTATTTCGAGGAAATGGTGACAAATGGAGAGTGGGATGAGGTGGAGAAGTATTTATCAGGATTCACCAAGGTTGATGATAATAG ATATTCCATGAAGATTTTCTTTGAGATCCGGAAGCAGAAGTATCTCGAGGCTTTAGATAAGCGGGATCGAGCCAAGGCGGTGGAAATTTTGGTGAAGGAC TTGAAAGTGTTTGCAGCATTTAATGAAGAGCTATTTAAGGAAATTACGCAGCTGTTGACATTGGAAAACTTCAGAGAAAACGAACAGTTGTCCAAGTACG GAGATACTAAATCTGCTAGAAACATAATGCTTGGTGAACTGAAGAAGTTGATAGAAGCTAACCCTTTGTTTCGGGACAAACTTCAGTTTCCTACATTGAA GAATTCAAGATTGCGAACCCTAATCAATCAAAGTTTAAATTGGCAACATCAGCTGTGTAAGAATCCTAGGCCTAATCCTGATATAAAGACCTTGTTCGTG GACCACAGCTGCGGTGGGCAGCCAAATGGTGCTCGAGCTCCATCGCCTGTCACCAATACCTTAATGGGTGGTATGCCAAAGCCAGGCGGCTTCCCTCCGC TTGGTGCTCATGGTCCGTTCCAACCTGCGCCTGCTACTTTACCAACATCTCTTGCTGGTTGGATGGCGAATCCATCCCCTGCCGCTCATCCATCAGCTTC CGCTGGACCCATTGGCCTGGCTGCTCCTAATAGTACAGCAGCTTTACTGAAGCGTCCCAGGACCCCTCCTACAAACAATCCAGCTATTGATTATCAAACG GCAGACTCTGAGCTTGTTATGAAAAGATCACGGCCTTTTGGAATGTCTGAAGAGGTTAATAATCTTCCTGTAAACATTCTGCCTGTTGGATATGCCGGCC ACAGCCATGGACAGAGTTCCTACTCATCTGATGATCTTCCAAAAAATGTTGTTATGGCCTTGAATCAAGGCTCAGCAGTGAAGAGTATGGATTTTCATCC ATTGCAGCAGATTTTACTTCTTGTTGCAACAAACATGGGTGATGTCATGGTATGGGAGCTGGGTAGCCGAGAAAGAATTGTTTTAAAGAATTTCAAGGTT TGGGACCTTGGAGCTTGTTCGATGGGATTGCAGGCATCTCTTGCCAATGATTATACAGCATCGGTGAACCGTGTCATGTGGAGTCCTGATGGAACTCTAT TTGGCGTTGCTTACTCTAAACACATTGTACACATCTATTCATACCATGGCGGTGATGATATAAGGAACCACCTTGAGATTGAGGCCCATGTTGGAAGTGT TAATGACCTCGCTTTCTCCTATCCCAACAAGCAACTGTGTGTAGTTACTTGCGGAGAAGACAGAGTGATTAAGGTGTGGGATGCAGTTACTGGCAATAAG CAGTTTACGTTTGAAGGTCATGAAGCATCTGTATATTCTGTGTGCCCACACCACAAAGAAAGTATTCAGTTTATATTCTCAACTGCAACTGATGGAAAGA TTAAAGCATGGTTGTATGATACCATGGGGTCAAGAGTTGATTATGATGCTCCAGGACATTCATCAACCACAATGGCATATAGTGCTGATGGAACAAGATT GTTCTCATGTGGGACAAACAAGGAGGGGGAATCACATTTGGTTGAATGGAATGAAAGTGAAGGTGCAGTAAAGCGCAGGTATAGTGGTCTTGGGAAGCGA TCAGTTGGAGTGGTACAATTCGATACCACCAAGAATCGGTTCTTGGCTGCTGGGGATGAGTTCACGGTGAAATTCTGGGACATGGATAATGTTAGCACAG TAACCAGTATAGATGCAGATGGAGGACTGCCGGCGCCTGCAATGCCAAATTTTGCTGCGGCCAATCCTAATCCAGGAATTAGCATGGGAAATCCAGCTGC TCCTGTGCCACCTCCTATGGTTGGGATGATTAGCGATAGTCGTTCTTTGGCTGATGTTAAACCTAGAATTGTTGATGAACCGGTGGAAAAGTCAAGGATC TGGAAGGCGGCCGAAATAAATGAACCAACTCACTGCCGTTCTCTTAGGCTTCCTGATAGTTTGACTGCAATGAGGGCTACTGCTAGCCTTGCACCACAAT TATGGCAACCATCTAGTGGAATATTGATGACCAATGATATAAGTGATACAAACCCTGAAGATGCTGTCCCATGCTTCGCTCTATCAAAGAATGATTCTTA TGTTATGTCAGCATCAGGAGGAAAGATTTCTCTTTTCAACATGATGACATTCAAGACAATGACAACGTTCATGCCCCCACCACCAGCCGCAACTTTCCTG GCGTTTCATCCTCAAGACAATAACATTATTGCTATCGGGATGCAGGATTCGACAATTCAGATATATAATGTCAGGGTTGATGAGGTTAAGACTAAGTTGC AAGGTCATCAGAAAAGAATCACTGGCCTTGCCTTCTCTAACACTCTAAATGTGCTAGTGTCTTCTGGAGCCGATTCTCAGCTGTGTGTGTGGAATACAGA TGGATGGGGGAAGCAAGCTAGCAAAACCTTGCAGATCCCTCCTGGACGTCCTACTTCTCCACTTTCAGATACCCGTGTCCAGTTTCACATTGACCAGACT CATCTCCTTGCGATTCATGAATCACAGATTGCACTTTATGAAGCACCAAAGCTGGAATGTCTGAAGCAGTGGTTCCCTAGAGATGTAAATCCCATCACAC ATGCTACGTATTCATGTGATAGCCAGTCGATATACGTTAGCTTTGAAGATGGAAGTGTGGGAGTTCTTTCGAGTCCTTCTCTGAGACTGAGATGTAGAAT AGGTTCTCCAGCATATTTACCTCCCAATCCAAGCTTAAGGGTGTATCCAGTAGTCATCGCTGCCCATCCATCAGAACCAAACCAGTTTGCGTTGGGACTA ACAGACGGTGGAGTTCATGTCCTAGAGCCATTAGAGTCAGAAGGCAAATGGGGCACCGCACCTCCAGCCGAAAATGGGGCTGGACCTAGCACTTCAGGTG CTCCGGCGGCGGCAGGTTCGGAACAAGCTCAAAGATGA
AA sequence Show only first row Show all	>Lus10019401 pacid=23181524 polypeptide=Lus10019401 locus=Lus10019401.g ID=Lus10019401.BGIv1.0 annot-version=v1.0 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFYFNMRYFEEMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKD LKVFAAFNEELFKEITQLLTLENFRENEQLSKYGDTKSARNIMLGELKKLIEANPLFRDKLQFPTLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFV DHSCGGQPNGARAPSPVTNTLMGGMPKPGGFPPLGAHGPFQPAPATLPTSLAGWMANPSPAAHPSASAGPIGLAAPNSTAALLKRPRTPPTNNPAIDYQT ADSELVMKRSRPFGMSEEVNNLPVNILPVGYAGHSHGQSSYSSDDLPKNVVMALNQGSAVKSMDFHPLQQILLLVATNMGDVMVWELGSRERIVLKNFKV WDLGACSMGLQASLANDYTASVNRVMWSPDGTLFGVAYSKHIVHIYSYHGGDDIRNHLEIEAHVGSVNDLAFSYPNKQLCVVTCGEDRVIKVWDAVTGNK QFTFEGHEASVYSVCPHHKESIQFIFSTATDGKIKAWLYDTMGSRVDYDAPGHSSTTMAYSADGTRLFSCGTNKEGESHLVEWNESEGAVKRRYSGLGKR SVGVVQFDTTKNRFLAAGDEFTVKFWDMDNVSTVTSIDADGGLPAPAMPNFAAANPNPGISMGNPAAPVPPPMVGMISDSRSLADVKPRIVDEPVEKSRI WKAAEINEPTHCRSLRLPDSLTAMRATASLAPQLWQPSSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFL AFHPQDNNIIAIGMQDSTIQIYNVRVDEVKTKLQGHQKRITGLAFSNTLNVLVSSGADSQLCVWNTDGWGKQASKTLQIPPGRPTSPLSDTRVQFHIDQT HLLAIHESQIALYEAPKLECLKQWFPRDVNPITHATYSCDSQSIYVSFEDGSVGVLSSPSLRLRCRIGSPAYLPPNPSLRVYPVVIAAHPSEPNQFALGL TDGGVHVLEPLESEGKWGTAPPAENGAGPSTSGAPAAAGSEQAQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10019401 [exp]	0	1
AT1G29370			Kinase-related protein of unkn...		Lus10015262 [exp]	2.6	0.9159
AT1G74040		IPMS2, MAML-3, ...	SOPROPYLMALATE SYNTHASE 2, 2-i...		Lus10019573 [exp]	8.1	0.9107
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012076 [exp]	11.5	0.8864
AT2G05710		ACO3	aconitase 3 (.1)		Lus10027165 [exp]	13.3	0.9068
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10035282 [exp]	13.8	0.9063
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Lus10012706 [exp]	14.2	0.9087
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10006650 [exp]	14.7	0.8496
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10005962 [exp]	15.7	0.9026
AT3G52990			Pyruvate kinase family protein...		Lus10035581 [exp]	20.3	0.9052
AT2G42520			P-loop containing nucleoside t...		Lus10029337 [exp]	21.4	0.8931

Compare expression of checked genes

Lus10019401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.