Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25430 578 / 0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) AT4G32285 575 / 0 ENTH/ANTH/VHS superfamily protein (.1.2) AT1G03050 401 / 1e-132 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 390 / 5e-128 ENTH/ANTH/VHS superfamily protein (.1) AT1G05020 246 / 1e-72 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 206 / 1e-57 ENTH/ANTH/VHS superfamily protein (.1) AT2G01600 201 / 1e-56 ENTH/ANTH/VHS superfamily protein (.1) AT5G35200 189 / 1e-52 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 185 / 6e-51 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 184 / 3e-50 ENTH/ANTH/VHS superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043260 [exp] 1028 / 0 AT4G32285 506 / 2e-173 ENTH/ANTH/VHS superfamily protein (.1.2) Lus10001502 [exp] 607 / 0 AT2G25430 914 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10002920 [exp] 603 / 0 AT2G25430 909 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10012686 [exp] 391 / 2e-128 AT1G03050 642 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10035340 [exp] 280 / 1e-84 AT1G05020 489 / 1e-164 ENTH/ANTH/VHS superfamily protein (.1) Lus10020824 [exp] 240 / 1e-70 AT1G03050 636 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10013469 [exp] 231 / 2e-67 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10029998 [exp] 232 / 6e-65 AT1G05020 437 / 5e-139 ENTH/ANTH/VHS superfamily protein (.1) Lus10007933 [exp] 226 / 6e-64 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G066900 [exp] 651 / 0 AT4G32285 665 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.018G128200 [exp] 633 / 0 AT4G32285 626 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.006G255000 [exp] 627 / 0 AT2G25430 866 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.018G026900 [exp] 621 / 0 AT2G25430 857 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.006G118100 [exp] 409 / 5e-136 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.002G224500 [exp] 266 / 3e-80 AT1G05020 500 / 2e-170 ENTH/ANTH/VHS superfamily protein (.1) Potri.014G158600 [exp] 264 / 1e-79 AT1G05020 493 / 2e-167 ENTH/ANTH/VHS superfamily protein (.1) Potri.010G110000 [exp] 228 / 6e-67 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.008G132100 [exp] 228 / 1e-66 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G142800 [exp] 197 / 4e-55 AT5G57200 655 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF07651 [flax] [poplar] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Lus10019402 pacid=23181575 polypeptide=Lus10019402 locus=Lus10019402.g ID=Lus10019402.BGIv1.0 annot-version=v1.0 ATGGCGCCGAGCACGATCAGAAAGGCAATCGGAGCGGTGAAGGACCAGACGAGTATAAGCCTGGCGAAGGTGGCCGGAACCGTAGCGCCGGAGCTGGAAG TACTGGTAGTCAAAGCCACCAGCCACGACCAGGATCCCACAGACGAAAAGTACTACAGAGAGATTCTCTACCTCACCTCAACCTCTTCCAGGGGTTACAT CGGCGCCTGCATCGCCACTGTCTCCAAGCGGCTGAGCAAGACTCACGACTGGATCGTCGCTCTCAAGTCCCTGATGCTGGTCCACCGCCTTCTGGCCGAC GGCCACTCTTCCTTCGAGGATGAGATCCTGCACGCGATGCGGAGCGGGATGAGAGTCCTTAACATGTCCGATTTCAGGGCCGAAGCCAGCTCCAATTCCT GGGATCACGCAGGCTTCGTCAGGTTCTACGCCATGTATTTGGAAGAGATGGTGCGGTGCTCTGCGTTCGAGAAGAAATGGTCAGGTAATCGAGGAGATAA TAACGAGAGGAATGATCATCGGAAGGTGTTTGGTGAGAGGGACGATGGATTCGATCAGAAATGGAGGAGATTCGATGAGAGGGATGGTGAATTTGGTAGA AGAGAGACTGCTAGGGTTCATGAGGGTGATGATTCGGATTCCACGAATTCGAATCTAAAGGAGATGGGGACAGAGGCTGTGATGGGGAAATCAAAGCAAT TGTTCAAGATTCTTGACAGGGTTTTGGCATGTAGACCGGCAGGGATGGCAAGGAGTAACAGACTGGTGCTGGTGGCGTTTCAACAGGTGGTGAAAGAAAG CTTTGTGCTGTATGTTGAGATATGCGAGACACTAGGAGTGCTGCTGGATCGATTCACCGAGATGGGGTATGCGAACTGTGTCAAGACTTTCGACATCCAT GTCAGTGCAGGGAAGATGATCGATGAGCTCATCGCGTTCTATGGTTGGTGTAAGGATATAGGGATTGCCAGATCTTCTGAGTACCCTGATGTGCAGAAGG TCACTGACAAACTGCTTGGAAATTTAGAAGGGTTTTTGAGAGAGATGGCCGCAAGGCCGCCTAAGAGTCCAGAGAGAAGTAAAGAGGAGGTGAAGATAAT CATCCCAGCTGAAGAACCATACATGAATGAGATAAAGGCTCTTCCTCCTCCTGAGAACTATATCACCCCAAAACCTGAACCATTATTGCAGAAGCCTGAG CCACCGAAGGTGACAGTGACGCAAGATTTGGTGAACTTGAGAGATGATGGTGTTACAGCTGACGGAGAGGGAAACAAATTAGCACTGTCACTATTCTCCG GAGCTACAAATGGTGATGGTTCATGGGAAAAATTCGCAGGAGATCAAGAAGTGACTTCAGCATGGCAGAACCCGGCTGCCGAGATGTGGAAAACAGATTG GGAACTTGCACTTGTGGAGACGGGGAGTATTTTATCAAAGCAGAAGGCAACAATGGGCGGGGGATTGGATTCGCTGATTCTGAACGGAATGTACGATCAG GGAGCAGTGAATCAGCATTCAAACGCTTCCCAGATGAGCAACGGAAGTGGTAGCAGTGTGGCACTGCGTATCAATAATGGGACGACGCAGCAAGTGCTGG CATTGCCTGCTCCAGATGGAACGATGATTGCCGTGGGGAACCAGGACCCTTTCGCTGCGTCGGTGGGGGTTCCTCCTCCGTCGTACGTGCAAATAGCAGA GATGGAGATGAAGCAGCAGCTGTTTATACAGGAACAGCATGCCTGGCAACACTATAATCCTCAGCAGAGTATGATGATGATGATGCCGCCACCGCCGCCG GTTTATGGAATGCAGCAGCAGCAGCCGGGAGGGTTTCATCAAACGGGGCCGTATTAA
AA sequence Show only first row Show all	>Lus10019402 pacid=23181575 polypeptide=Lus10019402 locus=Lus10019402.g ID=Lus10019402.BGIv1.0 annot-version=v1.0 MAPSTIRKAIGAVKDQTSISLAKVAGTVAPELEVLVVKATSHDQDPTDEKYYREILYLTSTSSRGYIGACIATVSKRLSKTHDWIVALKSLMLVHRLLAD GHSSFEDEILHAMRSGMRVLNMSDFRAEASSNSWDHAGFVRFYAMYLEEMVRCSAFEKKWSGNRGDNNERNDHRKVFGERDDGFDQKWRRFDERDGEFGR RETARVHEGDDSDSTNSNLKEMGTEAVMGKSKQLFKILDRVLACRPAGMARSNRLVLVAFQQVVKESFVLYVEICETLGVLLDRFTEMGYANCVKTFDIH VSAGKMIDELIAFYGWCKDIGIARSSEYPDVQKVTDKLLGNLEGFLREMAARPPKSPERSKEEVKIIIPAEEPYMNEIKALPPPENYITPKPEPLLQKPE PPKVTVTQDLVNLRDDGVTADGEGNKLALSLFSGATNGDGSWEKFAGDQEVTSAWQNPAAEMWKTDWELALVETGSILSKQKATMGGGLDSLILNGMYDQ GAVNQHSNASQMSNGSGSSVALRINNGTTQQVLALPAPDGTMIAVGNQDPFAASVGVPPPSYVQIAEMEMKQQLFIQEQHAWQHYNPQQSMMMMMPPPPP VYGMQQQQPGGFHQTGPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25430			epsin N-terminal homology (ENT...		Lus10019402 [exp]	0	1
AT4G32285			ENTH/ANTH/VHS superfamily prot...		Lus10043260 [exp]	3.0	0.8376
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10042057 [exp]	4.0	0.8290
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10021168 [exp]	4.9	0.8165
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10042106 [exp]	5.4	0.8784
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Lus10014283 [exp]	6.5	0.8595
AT4G12010			Disease resistance protein (TI...		Lus10042778 [exp]	6.5	0.8677
AT1G03910			unknown protein		Lus10030000 [exp]	8.3	0.8208
					Lus10039851 [exp]	9.9	0.7991
AT3G09660		MCM8	minichromosome maintenance 8 (...		Lus10015060 [exp]	11.1	0.8122
AT1G27340			Galactose oxidase/kelch repeat...		Lus10003117 [exp]	12.5	0.8327

Compare expression of checked genes

Lus10019402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.