Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G33530 1542 / 0 Transducin family protein / WD-40 repeat family protein (.1.2.3) AT2G26610 1406 / 0 Transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043261 [exp] 2181 / 0 AT3G33530 1707 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10038096 [exp] 1900 / 0 AT3G33530 1721 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10006655 [exp] 1710 / 0 AT2G26610 1476 / 0.0 Transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G128400 [exp] 1661 / 0 AT3G33530 1613 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019403 pacid=23181503 polypeptide=Lus10019403 locus=Lus10019403.g ID=Lus10019403.BGIv1.0 annot-version=v1.0 ATGTCTCCCGCCGCAACCCCGCCGGCGGACACCTCCCCGTGGGAATGCATGCTCCCTGGTCCTCCTTCCCGTAACAATTTCGGGTCCGTCGACATTTCTG CCTCCGGCCTCCTCGCTTTCCCTTCCGGATCTTCAGTCTCGGTAGTCGACTCCCGCTCCCTCCAGCACATCGCCACCATACCTCTCCCTGCTCCTACTTC CTCTTCCTCCTCTTCCGCATCCACCGCTCTCTCTCCTTTCGTCACCTCCGTCCGCTGGACTCCCCTCCCCTTACGCCGCGACCTCCTCGTCACGGAGCCT TCCTCCTCCCACCTGATCCTTGCTGCCGGAGACCGCCATGGCCGGATCGCCCTCGTCGATTTCCGCCATAGGTCGATCCTGCTCTGGCTGGAATCCGATT CGAGCTCCAAGTGTGGAATTCAGGACCTCTGCTGGATCCTTTGTAAGCCGGACTCATACATTCTCGCTGCCCTCTCTGGTCCTTCGACTCTCTCACTCTA CAACACCGCGTCTGGATACTGCTTCTTCAAGTACGACGCCACTCCGGAGCTGCTCTCGTGTATCCGCCGCGATCCGTTTGATCTCCGCCATGTGTGCGTT ATTGGCCTTAAGGGATTCATGTTGTCCATCAAAGTGCTTGGAGAAGGCGAGGACGAGGTTCTGGTGAAGGAACTTCGCGTTCCTACTGATTGCGCTGACT TGCTGAAGCTCGAAAAGGATGCTGCCGCCGGATCTTCTTCTTCTGCTTCCTCCTCCTCTGCTTCCGCCCCTGCTTCAGCTGTCTTCCCGCTATACTCGGT TAAGTTGACGTTTTCGCTGCACTGGCAGCACATTCTGTTCGTGACGTTCCCTAAAGAGCTAGTGGTGTTCGATTTGCAGTACGAGACTGCGCTATTTAGT TCTTCACTGCCGAGAGGGTGCGCCAAGTTCTTGGACGTGTTGACGGATCCGAATAGCCGCTTCTTGTACTGTGCACACCTGGATGGCAAGCTCAGCGTTT GGCGGCGTAACGGAGAAGAACAGGTGCATATGATGTGCTCAATGGAAGAGTTAATGCCTTCGATAGGAACTTCTGTTCCTTCACCTTCATTACTTGCTGT AACCATCTGTCAATCAGACTCCACTCTCCAGAATATTGCTAAGTTATATCGAGATACTCCCTCGGCCCGGGATATTGACAATCCTTTTGATTTCTATGAC GAGTCTCTACTTCTTTCGAAGACACACATGATTTCGATTTCTGATGATGGCAAATTATGGAATTGGCGTTTAACTGCTGAAGACATAGTAGAAAAGGATG TCAATATAATCCCATATATAGGAGATGATTTCAACAGTGGTGGTATCAAGCTGGAAGGAAACAAGCAACATGAGAACTTACGTGGCGATAAAAGGCGGTC ATCATCTCTTCCCAGTGAAGACAATACAACATTCAAGATATGCTTGGTTGGACAGCTGCAGCTGCTTTCCTCAACATTAACAATGCTGGCAGTTCCATCT CCTTCTTTAACAGCTACTTTAGCTCGCGGAGGGAATTATCCTGCTGTAGCGGTGCCACTTGTTGCTTTAGGAACTCAGAGTGGAATGGTTGACATTGTTG ATGTCTCTGCAAATGCTGTTGCTGCGAATTTTTCTGTTCACACAAGCTCAGTTCGTGGTCTGAGATGGCTTGGAAACTCCAGATTGGTTTCATTTTCTTA CAGTCAGGCTAACGAAAAGACTGGAGGTTATGTTAATCGACTTGTTGTAACCTGCATTAGAAGTGGCCTTAACAGACCATTCCGTGTTCTACAAAAGCCG GAGCGTGCACCCATTAGAGCCCTAAGGGCTTCTTCATCTGGAAGGTACCTTCTTATTTTGTTTCGTGACGCACCCGTGGAAGTTTGGGCAATGACGAAAA GCCCCGTTATGCTTAGATCCTTAGCTCTTCCGTTCACAGTGTTGGAATGGACCCTTCCAACCGTTCCAAAGCCAGCCCAGAATGGTCTTCCAAGCACACC GAGGGGATCCGATGGTCCATCCACCCCAAAACCATCTTCATCAGAATCTAATGTGAGCTCAGATACATCTCAAGAAGAGACTGCAGAAAGCTTTGCATTT GCACTCGTGAATGGGGCACTTGGAGTTTTTGAGGTTCATGGGCGGAAGATTCGAGATTTTAGACCAAAATGGCCATCTTCTTCATTTGTTCCGTCTGATG GGCTAATTACAGCAATGGCCTACCGCTTGCCTCACGTGGTAATGGGGGACAGAACAGGGAACATACGGTGGTGGGATGTAACGACGGGGTCTTCTTCTTC ATTTAACACTCACCGAGATGGGATACGGAGGCTTAGGTTCTCACCTGTTGTCCCTGGAGACCAGAGCAGAGGCCGCATAGCTGTGCTCTTTTATGATAAT ACCTTTTCCGTATTCGATCTTGTAAGTTGGAGACCTACAAATGTGTATCGTGCATTTTACACTCTTGCTCTGGATTCACCAGATCCGTTAGCCAATTCCC TCTTACAGCCTCAGTTTCCTGGAACTCTTGTGTTGGAACTCGATTGGTTGCCCTTGAGAACTGACAAAAATGACCCTCTTGTTTTGTGCATTGCTGGGGC TGATAGTAGCTTTCGCCTGCTAGAAGTCAATGTAAATGACAAAAGACATGGTTATAGACCTCAGTATCAATCTCTTAAAGAGAGATTCCGCCCTGTGCCT ATTTGCTCTCCTGTACTGCTACCCACTGCACATGCACTTGCTTTGCGTATGATCTTGCAATTGGGTGTCCAACCTTCATGGTTCAATACATTCAGCACAT CCATTGATAAGAGGCCACACTCACTTCCTGGCGCTTCTTCATCTGCCGGGGATTTACGTGGTTACATGATTGATCCACCAGCTATTGGAGATTCTGTGGT GCCTGAAATGCTGCTTAAAGTCTTAGAATCATATCGCAGAGAAGGTTGCATACTCGACGATGACATAGCAAAACTCTATTCAACGGTGCTCAATAAAGGT TGTGCTGTAAGGTTTGCATTTGCAGCCGCTGTTTTTGGTGATACCTCAGAAGCACTCTTCTGGTTGCAATTGCCTCATGCTTTAAAGCATCTGATGAGCA AACTAGCAAGCAGATCTCCATTAAAACCTGCAATGTCAGCAACAGAAACAGAGCTAGATGGTGCAGCCATGTTGACCAGAATTGCCTCTAGGGAAAAGTC GATGGCTAGTATGGGGAGAAGGGACTCATCGCTGAGTCACAGTCCGCTCAGATTGATGGCTTTCGAGCAGGAAGAGCTTTGGGATAGTGCAAATGAGCGT ATTCCTTGGCATGAAAAACTGGAGGGAGAAGCAGCTGTCCAGAATCAAGTGCATGAGCTTGTGACAGTTGGGAAACTGGAAGCAGCTGTTAGTTTGTTGC TTTCCACTCCACCAGATAGCTCTTTCTTCTACCCAAATGCTTTACGTGCAGTTGCTCTTTCGTCTGCCGTGTCTAAGTCCCTGCTTGAACTTGCAGTCAA GGTTGTCGCAGCAAACATGGTCAGGACAGACAGATCACTTTCCGGTACTCATCTTCTTTGTGCTGTTGGAAGGCATCAAGAAGCATGCTCACAGCTTCAA GATGCTGGATGCTGGACTGATGCCGCAACTCTTGCTGCTGCGCATTTGAACGGATCAGATTACGCGAGGGTGCTGCAGAGGTGGGCAGGGCATGTTCTTC ATACGGAGCATAATGTTTGGAGGGCACTTATTCTGTACGTTGCTGCTGGTGCTTTGCCGGAGGCCCTGGCAGCACTCCGAGAGGCACAACAACCAGACAC TGCTGCTATGTTCATCCTAGCTTGCCGTGAAATCCATGCCGAAATCCTCTCGAGTTCAGCGGGCGAAGCAGGTTGTTCAGGGTCAGCAGCCAGGTTGCCT GGTTTAGAAGCAGAGAACGAAGATGTGGTGGTGGTTGGTGAATATTTCGGGGAGTATCAGAGGAAATTGGTCCATCTGTGCATGGAATCACAGCCGCAAT ACGAGTGA
AA sequence Show only first row Show all	>Lus10019403 pacid=23181503 polypeptide=Lus10019403 locus=Lus10019403.g ID=Lus10019403.BGIv1.0 annot-version=v1.0 MSPAATPPADTSPWECMLPGPPSRNNFGSVDISASGLLAFPSGSSVSVVDSRSLQHIATIPLPAPTSSSSSSASTALSPFVTSVRWTPLPLRRDLLVTEP SSSHLILAAGDRHGRIALVDFRHRSILLWLESDSSSKCGIQDLCWILCKPDSYILAALSGPSTLSLYNTASGYCFFKYDATPELLSCIRRDPFDLRHVCV IGLKGFMLSIKVLGEGEDEVLVKELRVPTDCADLLKLEKDAAAGSSSSASSSSASAPASAVFPLYSVKLTFSLHWQHILFVTFPKELVVFDLQYETALFS SSLPRGCAKFLDVLTDPNSRFLYCAHLDGKLSVWRRNGEEQVHMMCSMEELMPSIGTSVPSPSLLAVTICQSDSTLQNIAKLYRDTPSARDIDNPFDFYD ESLLLSKTHMISISDDGKLWNWRLTAEDIVEKDVNIIPYIGDDFNSGGIKLEGNKQHENLRGDKRRSSSLPSEDNTTFKICLVGQLQLLSSTLTMLAVPS PSLTATLARGGNYPAVAVPLVALGTQSGMVDIVDVSANAVAANFSVHTSSVRGLRWLGNSRLVSFSYSQANEKTGGYVNRLVVTCIRSGLNRPFRVLQKP ERAPIRALRASSSGRYLLILFRDAPVEVWAMTKSPVMLRSLALPFTVLEWTLPTVPKPAQNGLPSTPRGSDGPSTPKPSSSESNVSSDTSQEETAESFAF ALVNGALGVFEVHGRKIRDFRPKWPSSSFVPSDGLITAMAYRLPHVVMGDRTGNIRWWDVTTGSSSSFNTHRDGIRRLRFSPVVPGDQSRGRIAVLFYDN TFSVFDLVSWRPTNVYRAFYTLALDSPDPLANSLLQPQFPGTLVLELDWLPLRTDKNDPLVLCIAGADSSFRLLEVNVNDKRHGYRPQYQSLKERFRPVP ICSPVLLPTAHALALRMILQLGVQPSWFNTFSTSIDKRPHSLPGASSSAGDLRGYMIDPPAIGDSVVPEMLLKVLESYRREGCILDDDIAKLYSTVLNKG CAVRFAFAAAVFGDTSEALFWLQLPHALKHLMSKLASRSPLKPAMSATETELDGAAMLTRIASREKSMASMGRRDSSLSHSPLRLMAFEQEELWDSANER IPWHEKLEGEAAVQNQVHELVTVGKLEAAVSLLLSTPPDSSFFYPNALRAVALSSAVSKSLLELAVKVVAANMVRTDRSLSGTHLLCAVGRHQEACSQLQ DAGCWTDAATLAAAHLNGSDYARVLQRWAGHVLHTEHNVWRALILYVAAGALPEALAALREAQQPDTAAMFILACREIHAEILSSSAGEAGCSGSAARLP GLEAENEDVVVVGEYFGEYQRKLVHLCMESQPQYE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G33530			Transducin family protein / WD...		Lus10019403 [exp]	0	1
AT5G40740			unknown protein		Lus10032081 [exp]	1.4	0.9230
AT1G76850		SEC5A	exocyst complex component sec5...		Lus10011294 [exp]	2.4	0.8849
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10030162 [exp]	6.0	0.9008
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001837 [exp]	6.2	0.8638
AT5G23430			Transducin/WD40 repeat-like su...		Lus10041007 [exp]	7.2	0.9069
AT2G27210		BSL3	BRI1 suppressor 1 (BSU1)-like ...		Lus10009783 [exp]	9.8	0.8939
AT1G09000		MAPKKK1, ANP1	MAP KINASE KINASE KINASE 1, NP...		Lus10015185 [exp]	12.2	0.8399
AT2G01480			O-fucosyltransferase family pr...		Lus10003715 [exp]	12.3	0.8398
AT1G73450			Protein kinase superfamily pro...		Lus10042297 [exp]	13.2	0.8804
AT1G71220		UGGT, PSL2, EBS...	PRIORITY IN SWEET LIFE 2, EMS-...		Lus10015475 [exp]	15.9	0.8731

Compare expression of checked genes

Lus10019403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.