Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24150 250 / 1e-81 unknown protein AT4G32295 214 / 4e-69 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043262 [exp] 515 / 0 AT3G24150 258 / 7e-84 unknown protein Lus10001504 [exp] 199 / 4e-62 AT4G32295 208 / 9e-67 unknown protein Lus10002918 [exp] 92 / 2e-22 AT4G32295 98 / 1e-25 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G128700 [exp] 276 / 2e-92 AT3G24150 248 / 1e-80 unknown protein Potri.006G067100 [exp] 278 / 2e-91 AT3G24150 259 / 2e-83 unknown protein Potri.006G254700 [exp] 233 / 2e-74 AT4G32295 243 / 8e-79 unknown protein Potri.018G027100 [exp] 231 / 3e-73 AT4G32295 238 / 6e-77 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019404 pacid=23181534 polypeptide=Lus10019404 locus=Lus10019404.g ID=Lus10019404.BGIv1.0 annot-version=v1.0 ATGCCAAGGCCTGGTCCAAGACCTTATGAGTGTGTGCGGAGAGCTTGGCACAGCGATAGGCACCAGTCCATGAGGGGTTCCATCATTCAGCAGATTTTCA GGGCTGTGAGTGAGAATCACAGTGCTGGTACTAGGAAGAACAAGGAATGGCAGGAGAAATTGCCTATTGTGGTATTGAAGGCTGAGGAAATCATCTATTC TAAAGTCAACTCTGAGGAAGAGTATATGAGCCAGGAAACTCTGTGGGATCGTGTCAATGAAGCCATCAATACCATCATTCGTCGAGAAGAGCATACTGAA ACTGGCAAGCTTTTGCCCCCTTGTGTCGAAGCTGCATTGAATCTGGGTTGCATTCCTGTGAGGGCTTCCAGAAGCCAGCGACATACAAACCAGAGAACTT ACCTCAGCCCGAGAATCCAAGAACCTGCACAACCTTCTTCACCTGTGCAACCACTACCTGCAAGGTTTTTGAGTGATGAGAGACCCCCTCAGTTGCCACC ATTTCATTCTGGCAATCAGAATTCAATAACAGCTGCAGATTCTAGTTGGTTGATGACAACAAAGGAAGCTGACCCGGTATCTCATTTCGGAACTGTGTAT CCCTTATATTACGGAGATCGCTACGAAAATAAGGAGCCGCAGTTTGTGTCTCAAGTCCCGGAGAGACCAGGCCCCACCAGCACTATTTTGTTGGGTAAAC CCATTAGTACATCAGCTGCTACTAGGCCTTCTGAAATGGGGACCCTGAAGAACTTTTTGGCTCCAAGTTATGAGATTGCTTCATTGAGGACTGAATATCG AGCCATCGAACCGTTTCATTGGTTGAGTAGAGAAAAGGCCAGGTATGTAGTAGGCAAAAGGGGTTTTGGGGTAGTGATGTATATGCTGCGGGAATTTTGA
AA sequence Show only first row Show all	>Lus10019404 pacid=23181534 polypeptide=Lus10019404 locus=Lus10019404.g ID=Lus10019404.BGIv1.0 annot-version=v1.0 MPRPGPRPYECVRRAWHSDRHQSMRGSIIQQIFRAVSENHSAGTRKNKEWQEKLPIVVLKAEEIIYSKVNSEEEYMSQETLWDRVNEAINTIIRREEHTE TGKLLPPCVEAALNLGCIPVRASRSQRHTNQRTYLSPRIQEPAQPSSPVQPLPARFLSDERPPQLPPFHSGNQNSITAADSSWLMTTKEADPVSHFGTVY PLYYGDRYENKEPQFVSQVPERPGPTSTILLGKPISTSAATRPSEMGTLKNFLAPSYEIASLRTEYRAIEPFHWLSREKARYVVGKRGFGVVMYMLREF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24150			unknown protein		Lus10019404 [exp]	0	1
AT3G45900			Ribonuclease P protein subunit...		Lus10033275 [exp]	1.0	0.8629
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Lus10018924 [exp]	2.8	0.8469
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	5.5	0.8508
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Lus10040022 [exp]	6.3	0.8520
AT3G08880			unknown protein		Lus10022668 [exp]	7.7	0.7955
AT3G24150			unknown protein		Lus10043262 [exp]	8.1	0.7839
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10032571 [exp]	8.5	0.8003
AT5G48450		SKS3	SKU5 similar 3 (.1)		Lus10038239 [exp]	8.9	0.8246
AT5G03670			unknown protein		Lus10027723 [exp]	11.4	0.8072
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10037969 [exp]	12.2	0.7798

Compare expression of checked genes

Lus10019404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.