Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20200 244 / 4e-70 nucleoporin-related (.1) AT3G10650 67 / 3e-11 AtNUP1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043265 [exp] 1308 / 0 AT5G20200 290 / 8e-87 nucleoporin-related (.1) Lus10028861 [exp] 55 / 3e-07 AT3G10650 436 / 2e-131 unknown protein Lus10008959 [exp] 52 / 2e-06 AT3G10650 405 / 4e-120 unknown protein Lus10034137 [exp] 50 / 5e-06 AT3G10650 323 / 2e-92 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G129900 [exp] 470 / 3e-155 AT5G20200 317 / 1e-96 nucleoporin-related (.1) Potri.010G244700 [exp] 83 / 5e-16 AT3G10650 353 / 8e-102 unknown protein Potri.008G014800 [exp] 74 / 2e-13 AT3G10650 379 / 1e-110 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019408 pacid=23181541 polypeptide=Lus10019408 locus=Lus10019408.g ID=Lus10019408.BGIv1.0 annot-version=v1.0 ATGGAGAGGAAGAACGATTCTCGCTACACGTCCCCGTACCTCGCCGGAGAAGAAGCTAGAGGCGCCGGGGGCAAGTTCAGGAAGCGCCCAGCCAGGAGAA CTTCTGCTTCTGCTACGCCTTATGCTCGGCCGCAGCCGATCTTAGCTCAGCGTACGCGGCCTTGGCTCTCCAGGCTAGCTAACCTAATCTTACCTAGCTT CTTCTCTCAATCAAATGCCCTCCCTGATCCTCTAGATACTGCGCGACGAGTTGAAGATAAAGAAGAGGAAGAAGAAGATGATCACGGTGATTCCGGAAAT AGGACTGAAGAGGAAAACGATAGAAGGGATGATGGAAGTTTTTCATTCAATCATCTGGTTCCGGGATCAACTCAACTGGGCGGTGCTAATGGAGCCACTA AAGAAATAAGTTCTCAGCCGGAGGTTGAAAGACTTGGAGAACAGCATAAGGTTGATACGTCAGATCATAATGGTCTATCTGAAATCGAGCAGCTACTGCA GAATAAAAAGTTTTCTAGGGATGAAGTCAACAGGCTTATTGGGGTACTTCGTTCCAAGGCTGATACTTCTCCCAACAAGGAGCAAGAGAAGCAACATTCC ACAATGTTTGGGCGGGATGATCAGGGTTCGGCTTTCCTTGAAGATTCTCAAAGGCACAGTCAAGAAAAGCAGGGATTTTCGCGCCCAAGTGTTTGGGGAA CGTCAGAGATGAAGAACAAGTATCCGACTTCAGTTACACAAGCCATTGTTGACCCGGCTTCGTGGACTGAGAATTCAAGAATGTCTTATGAAAGAAAGCA CGATGACACCAACGAGGTTACAGATGACGTGGGTGCTTCACCAATCCAAATTGCCAAAGCTTACATGCAAAAACGAACTTTGGAAGCAGGATTTGCATCC GAGGATGCAGCTGTAAGAGATGAAGGGCCATCATCTTGCGTTGACGAGCTAGCACTCGAACCATATATGGCATCATCTTCTATTAGATCATCGACATGCT GGCCAGGTGCGAGGGTCCGAGTTCAGACTGAGTATGCCACCCCTGTCAGTCAAAGAGGAAGATTTGGCTTTCAAAGCTTCCATAGGACCCCTTATTCTAG AGCTATTGCTTCAAAGTCCAAGACTAAGTTGCTCCAGTTGCAAGGGAAAAATGATAAGCCCCTGAACTTTCCTTCAACTCCATTCCAGCATTCTCAATCA TCCACTTATGGACAGTTTAGTTCAAAGGAGAAGTTGGGTACTGGTGAAGGATCTGTAGGACCTATCCGAAGAACACGGCGACGGGGAGCTATAGACATTT CTGCCAGAGGATCTCCCTTTTTAAGGCCATCCATGGATAGTCCCAAGGTTGAAAACTTGCATGATTCTGAAGGCATATTTTCTGCCTGGAAGAAGGATTC TGAGAAAGGAAGAACGCCTCACTCTGAAGTCGGTGCTCCAACTGGTCCTTCACATTCTAGCCAGACAGCTCGCAAGATATTAGAGCATCTGGACAGAAAC CCGGTAACTCCAAAAGAAAAGTCTGCCGAGTTAAGGCGGGCCACTGCATGGAAGAAGCCTGAATCTTCTAACTCGACAACTTTGATGCCATTTGAGTATA ATAGCTTGCCTCAGTTTGGCATTCCTGATTCAATTGGAAAATCAAACCAGGTTCATCAAAAGAAATCTGTACACTGGGGTGAAGATAGAGGGAAGTCTCT TTTTTCGGATTCTCAGGAATCTGGCAATAAAACTACTGATCCGGAGATTAAATCTCTTGCCTCTAGCTTAACAATTGTTGGTAGTAATGCCGTACCCCAG GCTGTTGATCCTAACCCATCACAAGAGTTGAAGCACAATACGGAGTCCCAAGTCAACAAACCAAATGAGAATGTTGCTGTCTTTGGGATTCCGTATCTAC CGCGTAAGAAGCCTCCAACCCACTCAACAGGGACGAAACCAGTTTTGCCATCTATCTCCATCGCAAAGCCCGATCAGAAGTGGGCGGCAGCTTCTGGTTT CACTTTCCAAATTCCTGCACCAAGTGGAATGTCCTCTGAGCCGCCGACTCCCTCCATGCCATCGTCCTATGCAAACGGCGTGCATCAGCCCGAAGCAGCT GATGCAGGACTGTCTATCCCTACTTACAGCTTTGGCTCAAACAAGGCGTCCCCTGCTCTTGCTTTTTCGTTCCCATCGACTAGCAGCAGCAGTCCCCTTT TACCAGACGCAAAATCGGATTTGAAGTTCAACTTTGGATCAGAGAAGAGCAGTAGGGTTTCGTTCAGTTCCATTGGTAAAGATTCCATCTGCTACTAA
AA sequence Show only first row Show all	>Lus10019408 pacid=23181541 polypeptide=Lus10019408 locus=Lus10019408.g ID=Lus10019408.BGIv1.0 annot-version=v1.0 MERKNDSRYTSPYLAGEEARGAGGKFRKRPARRTSASATPYARPQPILAQRTRPWLSRLANLILPSFFSQSNALPDPLDTARRVEDKEEEEEDDHGDSGN RTEEENDRRDDGSFSFNHLVPGSTQLGGANGATKEISSQPEVERLGEQHKVDTSDHNGLSEIEQLLQNKKFSRDEVNRLIGVLRSKADTSPNKEQEKQHS TMFGRDDQGSAFLEDSQRHSQEKQGFSRPSVWGTSEMKNKYPTSVTQAIVDPASWTENSRMSYERKHDDTNEVTDDVGASPIQIAKAYMQKRTLEAGFAS EDAAVRDEGPSSCVDELALEPYMASSSIRSSTCWPGARVRVQTEYATPVSQRGRFGFQSFHRTPYSRAIASKSKTKLLQLQGKNDKPLNFPSTPFQHSQS STYGQFSSKEKLGTGEGSVGPIRRTRRRGAIDISARGSPFLRPSMDSPKVENLHDSEGIFSAWKKDSEKGRTPHSEVGAPTGPSHSSQTARKILEHLDRN PVTPKEKSAELRRATAWKKPESSNSTTLMPFEYNSLPQFGIPDSIGKSNQVHQKKSVHWGEDRGKSLFSDSQESGNKTTDPEIKSLASSLTIVGSNAVPQ AVDPNPSQELKHNTESQVNKPNENVAVFGIPYLPRKKPPTHSTGTKPVLPSISIAKPDQKWAAASGFTFQIPAPSGMSSEPPTPSMPSSYANGVHQPEAA DAGLSIPTYSFGSNKASPALAFSFPSTSSSSPLLPDAKSDLKFNFGSEKSSRVSFSSIGKDSICY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20200			nucleoporin-related (.1)		Lus10019408 [exp]	0	1
AT5G20200			nucleoporin-related (.1)		Lus10043265 [exp]	3.2	0.7910
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Lus10043236 [exp]	3.5	0.7845
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Lus10004261 [exp]	6.9	0.7515
AT3G54620	bZIP	BZO2H4, ATBZIP2...	BASIC LEUCINE ZIPPER O2 HOMOLO...		Lus10018759 [exp]	8.1	0.7046
AT3G22440			FRIGIDA-like protein (.1)		Lus10006113 [exp]	8.2	0.7600
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10043012 [exp]	13.9	0.7098
AT5G37830		OXP1	oxoprolinase 1 (.1)		Lus10025331 [exp]	15.1	0.7778
AT4G16100			Protein of unknown function (D...		Lus10037716 [exp]	15.7	0.6864
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10005063 [exp]	25.7	0.7484
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Lus10042169 [exp]	29.6	0.7272

Compare expression of checked genes

Lus10019408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.