Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20190 156 / 2e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80130 139 / 1e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G32340 110 / 3e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G17940 100 / 4e-25 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G04530 81 / 1e-17 TPR4 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G07280 79 / 1e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT2G29670 76 / 1e-15 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043266 [exp] 382 / 8e-136 AT5G20190 162 / 1e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030103 [exp] 253 / 6e-84 AT5G20190 179 / 1e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002166 [exp] 252 / 1e-83 AT5G20190 192 / 8e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002013 [exp] 124 / 9e-34 AT4G32340 152 / 5e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024949 [exp] 104 / 1e-25 AT4G17940 125 / 8e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022877 [exp] 100 / 1e-24 AT4G17940 121 / 5e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000257 [exp] 100 / 3e-24 AT1G04530 179 / 3e-52 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014468 [exp] 100 / 7e-24 AT1G04530 177 / 1e-51 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023721 [exp] 100 / 9e-24 AT1G04530 171 / 4e-49 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G130100 [exp] 199 / 5e-63 AT5G20190 180 / 5e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G130300 [exp] 192 / 3e-60 AT5G20190 166 / 2e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G068200 [exp] 183 / 9e-57 AT5G20190 167 / 6e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G254300 [exp] 122 / 7e-34 AT4G32340 157 / 2e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G256900 [exp] 103 / 1e-25 AT4G17940 125 / 2e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G140500 [exp] 100 / 2e-25 AT4G17940 196 / 9e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G065400 [exp] 91 / 6e-21 AT1G04530 160 / 5e-46 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G172200 [exp] 90 / 2e-20 AT1G04530 137 / 1e-36 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G191600 [exp] 73 / 1e-14 AT2G29670 328 / 3e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G250100 [exp] 72 / 4e-14 AT2G29670 499 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019409 pacid=23181607 polypeptide=Lus10019409 locus=Lus10019409.g ID=Lus10019409.BGIv1.0 annot-version=v1.0 ATGCTTCTACGAAGCTCATCAACTCCGATACTGAATTCATGGATTCCACACTCCAAAGATCAACATCAGTCACCGAAATCCGATTCCTTACCCCAAATTC CGAGGACCCCATCCGTAACCTTGACCGCCTCATCTTCCAGCCCAATCTCGTCCCCTCCATTCTCTTCCCGTGGTGATTACGTCGGCAAAATGACGAGGGC GCTTTCCGAGACGGATCTGCGGAGTCTGTCATCATCAGCCCCGGTTCCGAAGAAGAATCCGATGGCCATCGGGTTAATGAACGGGTTAACCGTCGAGGAG AAGGACGAGGAGGAGGAGGAAACGGCGTCTTTCGATTGCGGGTTCGTTTGGGGATCCAACGGGTTGGGCGAAAAAACCGGATCGGAATGCGGCTTGTCGA CGCTCGTGGCCGGCGACGGAGCTGGCGGATGCGGCGGGAGGACAGGAACCGGCGGCCACGGTGGCGGGAGCGAGGAGTCTTCGGATTCGAATTATAAGAC GGAGGTGTATTACGAGACAATGATCGAATCTAATCCTGGGAATTCGTTACTGATGGGGAACTACGCTAGGTTCTTGAAAGATGTTCGTGGGGATTTGGTG AAGGCGGAAGAGTATTGCGGGAGAGCAATCCTGGTGAACCCTAACGACGGAGGTGTTCTTTCCATGTACGCCGATTTGATTTGGAGGAGCCACAAGGATT CTTCGAGAGCTGAGAGCTATTATGATCGTGCTGTTAAAGCCGCCCCTGAGGATTCGTAA
AA sequence Show only first row Show all	>Lus10019409 pacid=23181607 polypeptide=Lus10019409 locus=Lus10019409.g ID=Lus10019409.BGIv1.0 annot-version=v1.0 MLLRSSSTPILNSWIPHSKDQHQSPKSDSLPQIPRTPSVTLTASSSSPISSPPFSSRGDYVGKMTRALSETDLRSLSSSAPVPKKNPMAIGLMNGLTVEE KDEEEEETASFDCGFVWGSNGLGEKTGSECGLSTLVAGDGAGGCGGRTGTGGHGGGSEESSDSNYKTEVYYETMIESNPGNSLLMGNYARFLKDVRGDLV KAEEYCGRAILVNPNDGGVLSMYADLIWRSHKDSSRAESYYDRAVKAAPEDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10019409 [exp]	0	1
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10043266 [exp]	2.0	0.8675
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Lus10014283 [exp]	3.5	0.8871
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10030261 [exp]	5.3	0.8931
AT3G50120			Plant protein of unknown funct...		Lus10019324 [exp]	9.3	0.8329
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Lus10004371 [exp]	10.4	0.8302
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Lus10009364 [exp]	12.4	0.8421
AT1G18190		GC2	golgin candidate 2 (.1)		Lus10009060 [exp]	13.0	0.8558
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10030970 [exp]	17.9	0.8220
AT1G53903			Protein of unknown function (D...		Lus10003939 [exp]	18.1	0.8824
AT5G46590	NAC	ANAC096	NAC domain containing protein ...		Lus10010294 [exp]	19.8	0.7848

Compare expression of checked genes

Lus10019409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.