Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35410 729 / 0 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) AT4G24400 629 / 0 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT1G30270 551 / 0 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G21326 547 / 0 Ca2+regulated serine-threonine protein kinase family protein (.1) AT2G26980 541 / 0 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT1G01140 514 / 0 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT5G45820 427 / 1e-147 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G25110 422 / 1e-144 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT5G10930 416 / 5e-143 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT4G30960 405 / 5e-139 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043264 [exp] 810 / 0 AT5G35410 630 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10032822 [exp] 628 / 0 AT4G24400 738 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Lus10042816 [exp] 551 / 0 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10028115 [exp] 550 / 0 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10002692 [exp] 526 / 0 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10030210 [exp] 524 / 0 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10022590 [exp] 508 / 1e-179 AT2G26980 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10021488 [exp] 431 / 7e-150 AT2G26980 591 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10021852 [exp] 425 / 2e-146 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G130500 [exp] 774 / 0 AT5G35410 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.006G068400 [exp] 748 / 0 AT5G35410 686 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.001G222600 [exp] 566 / 0 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.002G109000 [exp] 564 / 0 AT4G24400 652 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Potri.009G021000 [exp] 557 / 0 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.006G062800 [exp] 557 / 0 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.018G119200 [exp] 543 / 0 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.014G104200 [exp] 534 / 0 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.002G177900 [exp] 529 / 0 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.010G002500 [exp] 433 / 1e-149 AT3G17510 631 / 0.0 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10019411 pacid=23181506 polypeptide=Lus10019411 locus=Lus10019411.g ID=Lus10019411.BGIv1.0 annot-version=v1.0 ATGAAGAAGGTAACGAGGAAGGTCGGCAAGTATGAGGTCGGCAGGACGATCGGCGAAGGTACGTTCGCCAAGGTTAAGTTTGCAAGGAATAAGGATACGG GCGAAAGCGTTGCCATCAAAGTCATGGTCAAATCCACCATTCTCAAACACAAAATGGTTGATCAGATTAAACGAGAAATTTCGATCATGAAGATTGTCAG ACATCCTTATATTGTCAGGTTACATGAGGTTTTGGCAGGAAGGACGAAGATATATATCATTCTCGAGTTTGTTACGGGCGGAGAACTGTATGATAGAATT GTTCACCAAGGAAGACTTAAAGAGCATGAGGCGAGGCGATACTTTCAACAGCTTATAGATGCAGTGGATCACTGCCATAGTAAGGGTGTGTACCACAGAG ACCTCAAGCCTGAAAACCTTCTTCTAGATGCCGCTGGGAATTTGAAGGTTTCCGACTTTGGATTGAGTGCGTTGCCTCAGGATGGTGTCGGTCTTCTCCA TACCACCTGCGGTACACCAAATTACGTTGCACCTGAGGTGCTTCGCCACCAAGGTTATGATGGTGCAGCTGCTGATATATGGTCATGTGGAGTAATCCTC TATGTTCTTATGGCTGGATATCTACCTTTTGATGAGACAGACCTTCCTACTTTATACAAGAAGATAAATGCTGCAGAATTCACTTGTCCTTTTTGGTTTT CTCCAGAGGCAAAGGCTCTAATAGATAAGATACTTACTCCCAATCCTGAAAATCGCATACAGATTAATGCAATAAGAAAAGATCCATGGTTCAGAAAGAA CTATATGCCTGTAAAAATCAGCAAAGAAGAAGAAGTGAATCTGGATGATGTCCGTGCAGTTTTTGATGACATTGAGGACCAATACGTAGCAGAGAAAACA GAAAGCAGTGATACAGGACCATTACTAATGAATGCCTTTGAGATGATTACCCTTTCCCAAGGGCTAAATCTATCAGCACTCTTTGACAGACACCAGGACT ATATAAAGAGGCAGACCCGTTTTGTATCCCGCAGACCAGCAAAAGATATAATTTCAACAGTTGAAGCAGTTGCCGTCTCGATGGGCCTCAAGGTTCATAC ACGTGGTTACAAGACTAGACTTGAAGGGATGTCAGCAAATAAAGCAGGTCAACTAGCAGTGGTGTTGGAGGTTTATGAGGTTGCACCTTCATTGTTCATG GTGGATGTTAGGAAGGCATCCGGGGAGACTCTCGAGTATCACAAGTTCTACAAGAAATTCTGTGCAAGGCTTGAGAATATTATATGGAAAGGAGCAGAAG GTGCGACTTCGGACTTGCTACGAACGATGACTTGCTGA
AA sequence Show only first row Show all	>Lus10019411 pacid=23181506 polypeptide=Lus10019411 locus=Lus10019411.g ID=Lus10019411.BGIv1.0 annot-version=v1.0 MKKVTRKVGKYEVGRTIGEGTFAKVKFARNKDTGESVAIKVMVKSTILKHKMVDQIKREISIMKIVRHPYIVRLHEVLAGRTKIYIILEFVTGGELYDRI VHQGRLKEHEARRYFQQLIDAVDHCHSKGVYHRDLKPENLLLDAAGNLKVSDFGLSALPQDGVGLLHTTCGTPNYVAPEVLRHQGYDGAAADIWSCGVIL YVLMAGYLPFDETDLPTLYKKINAAEFTCPFWFSPEAKALIDKILTPNPENRIQINAIRKDPWFRKNYMPVKISKEEEVNLDDVRAVFDDIEDQYVAEKT ESSDTGPLLMNAFEMITLSQGLNLSALFDRHQDYIKRQTRFVSRRPAKDIISTVEAVAVSMGLKVHTRGYKTRLEGMSANKAGQLAVVLEVYEVAPSLFM VDVRKASGETLEYHKFYKKFCARLENIIWKGAEGATSDLLRTMTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10019411 [exp]	0	1
AT1G52080		AR791	actin binding protein family (...		Lus10025846 [exp]	3.3	0.8908
					Lus10022348 [exp]	7.7	0.8394
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10041581 [exp]	8.9	0.8666
AT1G06870		Plsp2A	plastidic type I signal peptid...		Lus10032753 [exp]	9.7	0.8453
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10040912 [exp]	10.8	0.8616
AT1G67570			Protein of unknown function (D...		Lus10006430 [exp]	10.8	0.8304
AT3G03890			FMN binding (.1.2)		Lus10010649 [exp]	10.8	0.8206
AT5G20910		AIP2	ABI3-interacting protein 2, RI...		Lus10017865 [exp]	11.7	0.8322
AT4G00335		RHB1A	RING-H2 finger B1A (.1.2.3)		Lus10017788 [exp]	12.1	0.8688
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10008582 [exp]	13.0	0.8796

Compare expression of checked genes

Lus10019411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.