Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15760 55 / 2e-10 unknown protein AT1G52565 43 / 4e-06 unknown protein AT2G35850 40 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043269 [exp] 181 / 5e-60 AT3G15760 61 / 1e-12 unknown protein Lus10005715 [exp] 116 / 5e-34 AT3G15760 79 / 2e-19 unknown protein Lus10030098 [exp] 105 / 1e-29 AT3G15760 77 / 2e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G131100 [exp] 97 / 9e-27 AT3G15760 75 / 5e-18 unknown protein Potri.006G069100 [exp] 97 / 9e-27 AT1G52565 67 / 7e-15 unknown protein Potri.001G192800 [exp] 69 / 1e-15 AT1G52565 95 / 6e-26 unknown protein Potri.006G200000 [exp] 41 / 1e-05 AT3G52360 89 / 9e-25 unknown protein Potri.016G066200 [exp] 38 / 0.0002 AT3G52360 88 / 3e-24 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019413 pacid=23181619 polypeptide=Lus10019413 locus=Lus10019413.g ID=Lus10019413.BGIv1.0 annot-version=v1.0 ATGGCAGTCTCCGGCACCGTTATCCTCCTAGCCCTCCGCCTCCAAAAATCCACCACTACCCACTACTTATTTCCCCCCCACCACCCAACTCCCATATTGC GATCTTGCATCTCTTCCGGCGATAAGAACAATAAGACTAAGAACAAGGTTCGGTTCGCGGACGACGTGGTGGATCCCAAGGGCGACGGCGCGGAGTTCAG GAGGCACTGCCACGCCAAGATGAACGCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCAAGAGATCATGCGGTGGCGATGTTTCTCCGCCGCCGTCG TCGTCGTCGAAAGACAGGGGAATTCCGGCGAACAGAGTGGCTCTCTACTCCGGAATCATCAGGGATCGAGGGGTTCAACGGTTGACTTATTCTCACTGA
AA sequence Show only first row Show all	>Lus10019413 pacid=23181619 polypeptide=Lus10019413 locus=Lus10019413.g ID=Lus10019413.BGIv1.0 annot-version=v1.0 MAVSGTVILLALRLQKSTTTHYLFPPHHPTPILRSCISSGDKNNKTKNKVRFADDVVDPKGDGAEFRRHCHAKMNASSSSSSSSSSSKRSCGGDVSPPPS SSSKDRGIPANRVALYSGIIRDRGVQRLTYSH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15760			unknown protein		Lus10019413 [exp]	0	1
AT5G56350			Pyruvate kinase family protein...		Lus10013396 [exp]	6.3	0.8464
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10028157 [exp]	9.1	0.8314
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009925 [exp]	12.5	0.8063
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034974 [exp]	14.5	0.8049
AT5G11090			serine-rich protein-related (....		Lus10001946 [exp]	16.0	0.8007
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020847 [exp]	16.3	0.8106
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10013486 [exp]	16.4	0.8042
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10029541 [exp]	23.0	0.7694
AT1G24330			ARM repeat superfamily protein...		Lus10006427 [exp]	25.5	0.7492
AT3G12630		SAP5	stress associated protein 5, A...		Lus10015697 [exp]	27.3	0.7919

Compare expression of checked genes

Lus10019413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.