Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41475 176 / 8e-57 Embryo-specific protein 3, (ATS3) (.1) AT5G62200 144 / 4e-44 Embryo-specific protein 3, (ATS3) (.1) AT5G62210 118 / 2e-33 Embryo-specific protein 3, (ATS3) (.1) AT5G07190 100 / 1e-26 ATS3 seed gene 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031684 [exp] 154 / 5e-48 AT5G62200 223 / 5e-75 Embryo-specific protein 3, (ATS3) (.1) Lus10027387 [exp] 154 / 1e-47 AT5G62200 225 / 1e-75 Embryo-specific protein 3, (ATS3) (.1) Lus10043273 [exp] 0 / 1 AT2G41475 107 / 7e-32 Embryo-specific protein 3, (ATS3) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G069800 [exp] 179 / 1e-57 AT2G41475 194 / 1e-63 Embryo-specific protein 3, (ATS3) (.1) Potri.018G131800 [exp] 178 / 1e-57 AT2G41475 197 / 5e-65 Embryo-specific protein 3, (ATS3) (.1) Potri.001G193500 [exp] 161 / 5e-51 AT5G62200 184 / 1e-59 Embryo-specific protein 3, (ATS3) (.1) Potri.015G132700 [exp] 153 / 2e-47 AT5G62200 204 / 1e-67 Embryo-specific protein 3, (ATS3) (.1) Potri.015G132900 [exp] 123 / 1e-35 AT5G62200 153 / 4e-47 Embryo-specific protein 3, (ATS3) (.1) Potri.012G130900 [exp] 119 / 5e-34 AT5G62200 154 / 1e-47 Embryo-specific protein 3, (ATS3) (.1) Potri.012G130800 [exp] 105 / 2e-29 AT5G62200 150 / 6e-47 Embryo-specific protein 3, (ATS3) (.1) Potri.010G214400 [exp] 79 / 1e-18 AT5G62200 93 / 7e-24 Embryo-specific protein 3, (ATS3) (.1) Potri.003G107100 [exp] 43 / 2e-05 AT4G39730 166 / 1e-52 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0321 [flax] [poplar] PLAT PF06232 [flax] [poplar] ATS3 Embryo-specific protein 3, (ATS3)
Representative CDS sequence Show only first row Show all	>Lus10019416 pacid=23181511 polypeptide=Lus10019416 locus=Lus10019416.g ID=Lus10019416.BGIv1.0 annot-version=v1.0 ATGAATCCACTCCCAATTCCGCATCTACTTATCCTCTTCCAGCTTCTCATCGCAGCCGCCGCTCTTCCAAATGCTATATCTGCAGCAACACAGCAGCCCC AGTTCATCCATCATGGATACAAACCCAAGTCCCAGGCTGCAAACAGCTGTTCCTACACAGTAACCATAAAGACCAGCTGCGCTTCACCTTCTTTCACCAG AGACCAAATCAGCCTCGCCTTTGGCGATTCATCGGGCAGCGAGGTGTATGCTAAAAGGATCGACGACCCATATTCAAGGACATTCGAGAGGTGTTCCAAG GACACGTTCAAGATCACGGGGCCCTGCGTTAGGAGCGTCTGCTATCTGTACTTGCTTAGGAAGGGATATGACGGATGGAAACCGGAGAGTGTGAAGATCT ACGGTCGGTATTTTGGAACTGTTGGCTTTGACTTGGATGTGTTTCTGCCCAATGGGGTTTGGTACGGATTTAACAACCTCTGTAATTCTGTTGCTGCTAA TGGTGATGAATCTCTTTCTGCCAGCATGTAA
AA sequence Show only first row Show all	>Lus10019416 pacid=23181511 polypeptide=Lus10019416 locus=Lus10019416.g ID=Lus10019416.BGIv1.0 annot-version=v1.0 MNPLPIPHLLILFQLLIAAAALPNAISAATQQPQFIHHGYKPKSQAANSCSYTVTIKTSCASPSFTRDQISLAFGDSSGSEVYAKRIDDPYSRTFERCSK DTFKITGPCVRSVCYLYLLRKGYDGWKPESVKIYGRYFGTVGFDLDVFLPNGVWYGFNNLCNSVAANGDESLSASM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41475			Embryo-specific protein 3, (AT...		Lus10019416 [exp]	0	1
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10021852 [exp]	2.0	0.8533
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10000404 [exp]	3.0	0.8141
AT5G25450			Cytochrome bd ubiquinol oxidas...		Lus10008081 [exp]	7.7	0.8277
AT5G25450			Cytochrome bd ubiquinol oxidas...		Lus10013113 [exp]	8.2	0.8425
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10030871 [exp]	9.9	0.8110
AT5G58110			chaperone binding;ATPase activ...		Lus10040580 [exp]	11.5	0.8217
AT4G21620			glycine-rich protein (.1.2)		Lus10018454 [exp]	14.0	0.7348
AT5G18900			2-oxoglutarate (2OG) and Fe(II...		Lus10012014 [exp]	14.0	0.8011
AT2G28720			Histone superfamily protein (....		Lus10017456 [exp]	15.2	0.7683
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Lus10004213 [exp]	16.0	0.7885

Compare expression of checked genes

Lus10019416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.