Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47650 119 / 5e-35 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043274 [exp] 158 / 3e-50 AT3G47650 107 / 1e-30 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10030091 [exp] 135 / 2e-41 AT3G47650 129 / 3e-39 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10005719 [exp] 126 / 6e-38 AT3G47650 130 / 4e-40 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10002906 [exp] 108 / 1e-30 AT3G47650 109 / 1e-31 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10002020 [exp] 92 / 7e-25 AT3G47650 90 / 7e-25 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10026899 [exp] 42 / 4e-05 AT2G24860 154 / 6e-49 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G068300 [exp] 132 / 5e-40 AT3G47650 140 / 9e-44 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.018G028500 [exp] 116 / 6e-34 AT3G47650 120 / 4e-36 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.006G266800 [exp] 40 / 0.0001 AT2G24860 167 / 3e-54 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.018G016400 [exp] 40 / 0.0002 AT2G24860 165 / 5e-53 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019417 pacid=23181603 polypeptide=Lus10019417 locus=Lus10019417.g ID=Lus10019417.BGIv1.0 annot-version=v1.0 ATGGCAACTTCTTCATGCTTCACAACCATCTGCTCGCTTAATAAACCAGGACTTGTTGGGAATCCAGTTGCTCAAGGGAAAGTCCTTCAAGTAAACAGAG TTTTGCAGACCTCTAAAACCTCAAAGTCTCGGTCTTTCGTGGTCAAGGTCAGTTCTTTCTTTAGCTGTTGTTACATAATGTGCGTGACTGCTGCAACAGT TCTTCACACTGCAGAAGTGATATTAGAACAGGGAAAGGGGTTACGAGGACTAAAGAAAGCAACAGATGATAAGAAAACCGCGAAACCAAGAAGCATAGTA TGTACTGGCTGTGAAGGCAACGGGGCAGTATCATGTTCTCAGTGCAAAGGTTCAGGGGTCAATTCTGTTGACCACTTTAACGGACGGTTTAAAGCTGGTG GATTGTGCTGGTTATGCAGAGGTAAAAGGGAGACGTTGTGTGGGAACTGCAATGGAGCTGGGTTTGTCGGCGGGTTCATGAGCAGTTTCGACGAGTGA
AA sequence Show only first row Show all	>Lus10019417 pacid=23181603 polypeptide=Lus10019417 locus=Lus10019417.g ID=Lus10019417.BGIv1.0 annot-version=v1.0 MATSSCFTTICSLNKPGLVGNPVAQGKVLQVNRVLQTSKTSKSRSFVVKVSSFFSCCYIMCVTAATVLHTAEVILEQGKGLRGLKKATDDKKTAKPRSIV CTGCEGNGAVSCSQCKGSGVNSVDHFNGRFKAGGLCWLCRGKRETLCGNCNGAGFVGGFMSSFDE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10019417 [exp]	0	1
AT5G64050		ATERS, ERS, OVA...	OVULE ABORTION 3, glutamate tR...		Lus10022659 [exp]	6.9	0.9096
AT1G07080			Thioredoxin superfamily protei...		Lus10022669 [exp]	8.1	0.8808
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10038612 [exp]	16.9	0.8717
AT5G42030		ABIL4	ABL interactor-like protein 4 ...		Lus10023654 [exp]	17.0	0.8698
AT5G57670			Protein kinase superfamily pro...		Lus10019990 [exp]	20.8	0.8336
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10027371 [exp]	26.6	0.8697
AT3G59310			Eukaryotic protein of unknown ...		Lus10004060 [exp]	26.7	0.8006
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10015677 [exp]	33.0	0.8670
AT2G18260		ATSYP112, SYP11...	syntaxin of plants 112 (.1)		Lus10014297 [exp]	41.6	0.8065
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10016604 [exp]	42.7	0.8668

Compare expression of checked genes

Lus10019417 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.