Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26680 420 / 2e-148 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043275 [exp] 554 / 0 AT2G26680 457 / 6e-162 unknown protein Lus10005721 [exp] 486 / 2e-174 AT2G26680 444 / 6e-158 unknown protein Lus10030089 [exp] 432 / 7e-153 AT2G26680 400 / 4e-140 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G017900 [exp] 452 / 2e-161 AT2G26680 457 / 2e-163 unknown protein Potri.002G119800 [exp] 451 / 1e-160 AT2G26680 449 / 4e-160 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019418 pacid=23181507 polypeptide=Lus10019418 locus=Lus10019418.g ID=Lus10019418.BGIv1.0 annot-version=v1.0 ATGGCAAATGCGTGGAGAAGAGAGAGTAGAAACCCAAAGCTTCTCTCAGCAAAGCCACTGATCCTCCTCCTCCTCTCCATCTCCCTTCTCCTCGTCTTCC TTTTCCTCTCATCTCGTTTCCCAGCAAACCCAAATCTCACCCCATCTCTCTCAATCTCAAATCCTCTCTCAAAACCCTACCCAATCCCTCCTTTCAACTG CTTCAATTCCCCACAAGCTCACCCTGTAGTAGCCAATTTGGTGGAAAATGTGAAATACCCTTTCCTCTTCTCCTTGTCTGATTTCGGATCTTTGCCCGAT AAGCCTCACAAGAACATCGTAAGGTTGCTGAAAGGGAAGCTTTTTCGGAAGCCTGATATCTCCGCTACGATCCAGGGGATTCTCCAAGGTAAGAAGAGTG ATGATGGGGTAGTTGTGGATGTGGGTGCTAATGTGGGAATGGCCAGCTTTGCAGCTGCGGTTATGGGGTTCAAGGTGCTTGCTTTTGAGCCTGTCATGGA GAATCTGCAGAGGATCTGTGATGGGATTTGGTTCAATCGAGTTGGGGATCTGGTTACTGTTTTTGATGCTGCTGCTTCTGATCGGGTTGGGAATATCACT TTCCATAAGTTGGTTGGCCGGCTTGACAACAGTGCCATATCAGCCACCGGTGCAAAACTAGCATTCAAGTCCAACGAGGAAGTAGCAGTTCAAGTTCAGA CGATACCTTTGGACGAGGTGATCCCGGATTCACAGCCCGTGCTTCTGATCAAAATCAATGTGCAGGGGTGGGAATATCATGTATTGAAAGGAGCCTCGAA ATTGCTCTCTAGAGCAAAGGGCGAAGCCCCCTACGTCATCTACGAAGAAGACGAGCGGTTGCTCCAAGCTAGCAATAGCAGTGCCAAAGAGATCCGTGAT TTCCTGCACACTGTTGGCTACCATCACTGCACCCAGCATGGCACTGACGCACACTGTACTAAGGAATGA
AA sequence Show only first row Show all	>Lus10019418 pacid=23181507 polypeptide=Lus10019418 locus=Lus10019418.g ID=Lus10019418.BGIv1.0 annot-version=v1.0 MANAWRRESRNPKLLSAKPLILLLLSISLLLVFLFLSSRFPANPNLTPSLSISNPLSKPYPIPPFNCFNSPQAHPVVANLVENVKYPFLFSLSDFGSLPD KPHKNIVRLLKGKLFRKPDISATIQGILQGKKSDDGVVVDVGANVGMASFAAAVMGFKVLAFEPVMENLQRICDGIWFNRVGDLVTVFDAAASDRVGNIT FHKLVGRLDNSAISATGAKLAFKSNEEVAVQVQTIPLDEVIPDSQPVLLIKINVQGWEYHVLKGASKLLSRAKGEAPYVIYEEDERLLQASNSSAKEIRD FLHTVGYHHCTQHGTDAHCTKE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26680			unknown protein		Lus10019418 [exp]	0	1
AT2G26680			unknown protein		Lus10043275 [exp]	1.4	0.9093
AT1G80690			PPPDE putative thiol peptidase...		Lus10042454 [exp]	2.0	0.8994
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10025395 [exp]	4.5	0.8529
AT2G14835			RING/U-box superfamily protein...		Lus10002131 [exp]	6.0	0.8755
AT5G11980			conserved oligomeric Golgi com...		Lus10026437 [exp]	7.5	0.8864
AT3G58460		ATRBL15	RHOMBOID-like protein 15 (.1.2...		Lus10021092 [exp]	8.1	0.8380
AT5G58300			Leucine-rich repeat protein ki...		Lus10019113 [exp]	8.7	0.8310
AT1G08760			Plant protein of unknown funct...		Lus10026806 [exp]	10.4	0.8526
AT1G31780			unknown protein		Lus10037280 [exp]	11.0	0.8501
AT2G02790		IQD29	IQ-domain 29 (.1)		Lus10030784 [exp]	12.8	0.8428

Compare expression of checked genes

Lus10019418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.