Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55190 443 / 8e-159 RAN3, ATRAN3 RAN GTPase 3 (.1) AT5G20010 433 / 6e-155 ATRAN1, RAN-1 ARABIDOPSIS THALIANA RAS-RELATED NUCLEAR PROTEIN, RAS-related nuclear protein-1 (.1) AT5G20020 413 / 6e-147 RAN2 RAS-related GTP-binding nuclear protein 2 (.1) AT5G55080 309 / 7e-106 ATRAN4 ras-related nuclear protein 4 (.1) AT5G20160 201 / 7e-65 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) AT4G22380 200 / 1e-64 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) AT4G12600 196 / 7e-63 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) AT4G39890 104 / 2e-26 AtRABH1c RAB GTPase homolog H1C (.1) AT4G19640 100 / 9e-25 ATRAB-F2B, ARA7, Ara-7, AtRABF2b, AtRab5B ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) AT5G39620 99 / 1e-24 AtRABG1 RAB GTPase homolog G1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043276 [exp] 659 / 0 AT5G55190 428 / 9e-153 RAN GTPase 3 (.1) Lus10019441 [exp] 459 / 6e-165 AT5G55190 434 / 2e-157 RAN GTPase 3 (.1) Lus10043297 [exp] 455 / 2e-163 AT5G55190 430 / 1e-155 RAN GTPase 3 (.1) Lus10017031 [exp] 211 / 2e-68 AT4G22380 220 / 2e-75 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10015295 [exp] 206 / 1e-64 AT4G22380 217 / 7e-72 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10025435 [exp] 206 / 3e-64 AT4G22380 203 / 7e-66 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10029745 [exp] 105 / 8e-25 AT1G43900 422 / 2e-144 Protein phosphatase 2C family protein (.1) Lus10004687 [exp] 100 / 1e-24 AT1G07410 363 / 2e-129 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Lus10040255 [exp] 100 / 1e-24 AT1G07410 363 / 2e-129 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G250300 [exp] 443 / 9e-159 AT5G55190 424 / 4e-153 RAN GTPase 3 (.1) Potri.018G030900 [exp] 439 / 2e-157 AT5G55190 424 / 3e-153 RAN GTPase 3 (.1) Potri.018G030700 [exp] 439 / 2e-157 AT5G55190 424 / 3e-153 RAN GTPase 3 (.1) Potri.006G250400 [exp] 426 / 4e-152 AT5G55190 411 / 3e-148 RAN GTPase 3 (.1) Potri.013G116800 [exp] 206 / 1e-66 AT4G12600 216 / 3e-74 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Potri.019G087100 [exp] 202 / 2e-65 AT4G12600 213 / 9e-73 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Potri.001G152800 [exp] 100 / 3e-25 AT1G02130 382 / 2e-137 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.003G086700 [exp] 100 / 8e-25 AT2G44610 397 / 4e-143 Ras-related small GTP-binding family protein (.1) Potri.019G092500 [exp] 100 / 9e-25 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.005G073000 [exp] 100 / 9e-25 AT5G65270 402 / 1e-144 RAB GTPase homolog A4A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0101 [flax] [poplar] PELOTA PF01248 [flax] [poplar] Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10019420 pacid=23181482 polypeptide=Lus10019420 locus=Lus10019420.g ID=Lus10019420.BGIv1.0 annot-version=v1.0 ATGACTGGTGAAGCAGTAAACCCGAAAGCCTATCCGCTCGCTGATTCTCAGCTGACAATCACCATTCTCGACCTTGTTCAACAAGCTGCTAACTACAAGC AGCTCAAGAAGGGAGCAAATGAAGCTACCAAGACACTGAACAGGGGTATCTCTGAGTTCGTTGTCATGGCTGCCGATACTGAGCCCCTCGAGATTCTTCT CCACCTACCATTGCTTGCTGAGGACAAGAATGTGCCATATGTGTTTGTTCCTTCAAAGCAAGCACTTGGCAGAGCTTGTGGTGTCACAAGACCTGTCATC TCTTGTTCCGTGACAACGAACGAAGGAAGCCAATTGAAGTCTCAGATACAACAACTCAAGGCTCTGCCGAATCAGCAAGTAGTTGACTACCCGAGCTTCA AGCTCGTTATTGTTGGCGATGGAGGGACTGGGAAAACCACATTCGTCAAGAGACATTTGACTGGAGAGTTTGAGAAGAAATATGAACCAACCATTGGCGT GGAAGTCCATCCTTTGGATTTCACTACCAACTGTGGAAAGATCCGATTCTACTGCTGGGACACAGCTGGACAAGAGAAGTTTGGCGGACTCAGAGATGGA TACTACATCCATGGTCAGTGTGCGATTATAATGTTTGATGTAACGGCAAGATTGACCTACAAGAATGTTCCTACATGGCACCGTGATCTCTGCAGGGTTT GTGAAAATATACCCATTGTTCTCTGTGGAAACAAGGTTGATGTGAAGAACAGGCAGGTTAAGGCTAAGCAGGTTACTTTCCACAGGAAGAAGAATCTCCA GTACTATGAGATTTCTGCCAAGAGCAACTACAACTTTGAGAAGCCTTTCCTCTACCTTGCTCGCAAGCTTGCTGGGGACCCCAATCTTCACTTTGTGGAG GCGGTTGCCCTCCGTCCTCCAGAGGTTCAAATTGACATGGCTACACAGGAACAACATGAAAAAGAGCTTGCTCAAGCTGCTAACCAGCCTCTTCCTGATG ACGATGATGATGCATTCGAGTAA
AA sequence Show only first row Show all	>Lus10019420 pacid=23181482 polypeptide=Lus10019420 locus=Lus10019420.g ID=Lus10019420.BGIv1.0 annot-version=v1.0 MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI SCSVTTNEGSQLKSQIQQLKALPNQQVVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFTTNCGKIRFYCWDTAGQEKFGGLRDG YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE AVALRPPEVQIDMATQEQHEKELAQAANQPLPDDDDDAFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10019420 [exp]	0	1
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10039691 [exp]	2.4	0.7873
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10007201 [exp]	4.9	0.7728
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10018393 [exp]	7.1	0.8006
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10043276 [exp]	8.8	0.7916
AT4G39690			unknown protein		Lus10022509 [exp]	10.7	0.7281
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10018394 [exp]	11.7	0.8005
AT5G62300			Ribosomal protein S10p/S20e fa...		Lus10031705 [exp]	13.9	0.7551
AT1G04480			Ribosomal protein L14p/L23e fa...		Lus10024943 [exp]	15.0	0.7733
AT3G55605			Mitochondrial glycoprotein fam...		Lus10030157 [exp]	15.5	0.7876
AT2G40290			Eukaryotic translation initiat...		Lus10007521 [exp]	19.2	0.7880

Compare expression of checked genes

Lus10019420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.