Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57340 350 / 3e-119 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) AT5G05750 252 / 4e-82 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G49060 216 / 3e-67 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) AT2G20560 72 / 9e-14 DNAJ heat shock family protein (.1) AT1G59980 71 / 2e-13 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT5G25530 70 / 3e-13 DNAJ heat shock family protein (.1) AT4G28480 69 / 4e-13 DNAJ heat shock family protein (.1.2) AT3G06778 68 / 5e-13 Chaperone DnaJ-domain superfamily protein (.1) AT2G22360 70 / 6e-13 DNAJ heat shock family protein (.1) AT3G17830 68 / 3e-12 Molecular chaperone Hsp40/DnaJ family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043277 [exp] 588 / 0 AT3G57340 408 / 2e-140 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10030079 [exp] 468 / 1e-165 AT3G57340 420 / 6e-147 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10006515 [exp] 191 / 5e-58 AT5G49060 300 / 8e-101 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Lus10037502 [exp] 191 / 2e-57 AT5G49060 340 / 7e-116 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Lus10013981 [exp] 77 / 2e-15 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10021961 [exp] 76 / 6e-15 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10041254 [exp] 76 / 6e-15 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1) Lus10015402 [exp] 76 / 6e-15 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10030803 [exp] 74 / 2e-14 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G153700 [exp] 435 / 4e-153 AT3G57340 391 / 8e-136 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Potri.010G013200 [exp] 198 / 6e-60 AT5G49060 327 / 3e-110 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Potri.016G120000 [exp] 72 / 1e-13 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.008G194000 [exp] 71 / 1e-13 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 71 / 3e-13 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 70 / 3e-13 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 69 / 5e-13 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 69 / 1e-12 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 68 / 2e-12 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.009G065500 [exp] 68 / 3e-12 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF09320 [flax] [poplar] DUF1977 Domain of unknown function (DUF1977)
Representative CDS sequence Show only first row Show all	>Lus10019421 pacid=23181562 polypeptide=Lus10019421 locus=Lus10019421.g ID=Lus10019421.BGIv1.0 annot-version=v1.0 ATGGACGGGAACAAAGACGACGCGTTGAAATGCTTGAGAATCGGCAAGGAAGCACTCACATCGGGGGACAGGGCTCGCGCTGTGAAATTCTTCTACAAAG CTCGCCGTCTAGATCCAACTCTTCGGATCGAAGATCTGATCGCGGAGGCTGAGAAGGAGAATGAGTCGTCGTCGTCTGATCAGACATCTGGGAAGGCTAA CGGGTCGGCAAGTAATGAATCGAAGCTTCGTCATCGAGCTAACGGAACTGCCCCGGCGTCTCCTTTTGCTGCCGCCGGTGGTGTTGGTGGCTCGGCCTCG TCATCATCGCCTAATTACACTGAGGATCAAGTCAAGATGGTAAGACAGATTAATAAGAAGAAGGATTATTATGAAATTTTGGGAGTGGAGAAGAGCTGTA CTGTTGATGATGTTCGTAAGGCGTATAGGAAGTTGTCATTGAAAGTTCATCCTGATAAGAACCCAGCACCAGGAGCTGAGGAGGCGTTTAAGTCGGTGTC TAAAGCGTTCCAGTGTCTGAGCAATGAAGAGAGTAGGAATAAATATGATGTAACTGGGAGTGAAGAGCCTGTTATTGAGAGACGAGCTGCTAGACGTCAT GGTGGAGGAGGAATGCACAATGGGTTTTATGATGAATTTGATGCTGACGAGATATTCAGGCAGTTCTTCTATGGAGGAATGTCTCCTGCAGCTACACAGT TTAGGACTTTCAACTTTGGGGGTGGGATGGGAGGACCTAGAACGGGTGATAATGGATCCGGGTTCAATGCTCGTGCTTTGATTCAGCTGCTGCCTGTTCT GTTGATTGTGCTTTTCAGTTTCCTGCCATCTTCGGATCCGATTTACTCACTCTCTCGGTCATATCCTTATGAACATAGGTACACCACGGAGAAAGGGGTT AACTTCTATGTCAAGAGTGGTAACAGATTTGAGCAGGATCATCCAATTGGTAGCCAGAACAGGATAGCGGTTGAAGGAAAAGTGGAGAGGGACTACGTTT CACTACTTGCTCAGAATTGCCGGTTTGAGTTGCAAAGGCAGCAGTGGGGCTTTGTACGGGAGACTCCACATTGTGAGATGTTGCAGCAGTATCAGTCTGG GGAAAGTGCTGCTTGA
AA sequence Show only first row Show all	>Lus10019421 pacid=23181562 polypeptide=Lus10019421 locus=Lus10019421.g ID=Lus10019421.BGIv1.0 annot-version=v1.0 MDGNKDDALKCLRIGKEALTSGDRARAVKFFYKARRLDPTLRIEDLIAEAEKENESSSSDQTSGKANGSASNESKLRHRANGTAPASPFAAAGGVGGSAS SSSPNYTEDQVKMVRQINKKKDYYEILGVEKSCTVDDVRKAYRKLSLKVHPDKNPAPGAEEAFKSVSKAFQCLSNEESRNKYDVTGSEEPVIERRAARRH GGGGMHNGFYDEFDADEIFRQFFYGGMSPAATQFRTFNFGGGMGGPRTGDNGSGFNARALIQLLPVLLIVLFSFLPSSDPIYSLSRSYPYEHRYTTEKGV NFYVKSGNRFEQDHPIGSQNRIAVEGKVERDYVSLLAQNCRFELQRQQWGFVRETPHCEMLQQYQSGESAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10019421 [exp]	0	1
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Lus10022459 [exp]	1.0	0.9280
AT1G11050			Protein kinase superfamily pro...		Lus10001295 [exp]	1.7	0.9135
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10043277 [exp]	2.4	0.9146
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10026239 [exp]	4.5	0.9055
AT4G13530			unknown protein		Lus10030342 [exp]	4.5	0.9116
AT3G61180			RING/U-box superfamily protein...		Lus10029582 [exp]	4.9	0.9019
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10000940 [exp]	5.3	0.9035
AT1G22040			Galactose oxidase/kelch repeat...		Lus10020960 [exp]	6.0	0.9036
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10033816 [exp]	6.7	0.9008
AT1G67600			Acid phosphatase/vanadium-depe...		Lus10011373 [exp]	7.7	0.8886

Compare expression of checked genes

Lus10019421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.