Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37990 365 / 2e-126 ribosome biogenesis regulatory protein (RRS1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043278 [exp] 476 / 2e-169 AT2G37990 373 / 9e-130 ribosome biogenesis regulatory protein (RRS1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G231000 [exp] 390 / 1e-135 AT2G37990 324 / 6e-110 ribosome biogenesis regulatory protein (RRS1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04939 [flax] [poplar] RRS1 Ribosome biogenesis regulatory protein (RRS1)
Representative CDS sequence Show only first row Show all	>Lus10019422 pacid=23181497 polypeptide=Lus10019422 locus=Lus10019422.g ID=Lus10019422.BGIv1.0 annot-version=v1.0 ATGGATAATCCGACTCCAATGGAGATCCATAACCAATACCAGGTCGACCTCGGCCATCTGATGGCGTTCGACCCATACAACTTCCCTTCTTACCCTAAAG CCAGGGAGGAATTGGTGAAGGAGTGTTTAAAGAAAGGGACTGAGCTTGTTCAAGCCATTGCTGATTCCCTTTTCCACTTGCCATCTACGGATGATATTCA GGGCCCTTTAGTAAAGCTGCCTCCTCCCACCACTAAGCTTCCCAGAGAGAAGCATGTACCTCTGCCTAAACCTGAAACCAAATGGGAAAAGTTTGCCAAA GTTAAAGGAATACAGAAACGTAAAAAGGACAAGGTTTTATGGGATGATCAAACTAACCAGTGGAAACGCAGATATGGATATGATCGTGTTAATGATGATG CTGATGTCCCAATCATTGAGGGCAAGATGACTGATGGTAATGCTGCTTTAGAGTCATCAACCTATCAACCTGGAGGTGATCCTTTTGCCAAGAGGATAGC AGATAAGAAGAAAAGAGTTGGGAAGCAAGAGAATAATCGTTTGCAAAATTTGAAAGAAGCTGCAAAAGTTAATGCTTTGCCAAGCCATGTTCAGCTAGCT GCCACATCATTACCTATAACCGGAACACAATCATTACCAAAGAAAATTACAAAAGACGAACTGGGCAATGTTGCCGGACTTGCAGGAATAGCCACAGCCA GCGGTGGAAAGTTCGATAAGAAGGTACGAGGTGAAAAGCCCGCCAAACACGAAGGAAAATATCGCAAGTTCTTACCAGCTGCTGAAGGCTCAGGAATGGG CAACCGAGAGAAAGAACAAACAGACAAAGTGTTGAGCAAACTAATGGCGAAAAGCTCGCATGAGATTCTCAATGTCAACAAAGCCATTAACATGTACAAT GGGAAGAACGAGAAGAAAGGGAGAAGGGATAATAAAGGAGGAGGGAAACCAAGTGGCAAGCCCAAATCTCCTTACAGCTCTAGTAAGTTGAAACCAAGTG GCAAACCCATGAAAGGTGGCAAGAACAGCAAACCAAACAAGAAGTTTGCCAAAGGTGGTTCAAACAGAGGGAGGGCTGAATAA
AA sequence Show only first row Show all	>Lus10019422 pacid=23181497 polypeptide=Lus10019422 locus=Lus10019422.g ID=Lus10019422.BGIv1.0 annot-version=v1.0 MDNPTPMEIHNQYQVDLGHLMAFDPYNFPSYPKAREELVKECLKKGTELVQAIADSLFHLPSTDDIQGPLVKLPPPTTKLPREKHVPLPKPETKWEKFAK VKGIQKRKKDKVLWDDQTNQWKRRYGYDRVNDDADVPIIEGKMTDGNAALESSTYQPGGDPFAKRIADKKKRVGKQENNRLQNLKEAAKVNALPSHVQLA ATSLPITGTQSLPKKITKDELGNVAGLAGIATASGGKFDKKVRGEKPAKHEGKYRKFLPAAEGSGMGNREKEQTDKVLSKLMAKSSHEILNVNKAINMYN GKNEKKGRRDNKGGGKPSGKPKSPYSSSKLKPSGKPMKGGKNSKPNKKFAKGGSNRGRAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37990			ribosome biogenesis regulatory...		Lus10019422 [exp]	0	1
AT2G03670		CDC48B	cell division cycle 48B (.1)		Lus10018033 [exp]	5.7	0.8750
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10000421 [exp]	5.7	0.9098
AT5G48450		SKS3	SKU5 similar 3 (.1)		Lus10038239 [exp]	8.4	0.8512
AT2G37990			ribosome biogenesis regulatory...		Lus10043278 [exp]	8.5	0.8999
AT2G48100	C2H2ZnF		Exonuclease family protein (.1...		Lus10042687 [exp]	9.0	0.8267
AT4G24790			AAA-type ATPase family protein...		Lus10013665 [exp]	9.7	0.8701
AT4G33060			Cyclophilin-like peptidyl-prol...		Lus10024999 [exp]	10.8	0.8592
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10014035 [exp]	11.6	0.9071
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10019321 [exp]	11.7	0.8896
AT5G22330		ATTIP49A, RIN1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10040479 [exp]	12.3	0.8861

Compare expression of checked genes

Lus10019422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.