Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26830 469 / 6e-161 EMB1187 embryo defective 1187, Protein kinase superfamily protein (.1) AT1G25260 338 / 4e-112 Ribosomal protein L10 family protein (.1) AT4G09760 178 / 8e-50 Protein kinase superfamily protein (.1.2.3) AT1G71697 167 / 6e-46 ATCK1 choline kinase 1 (.1) AT1G74320 156 / 4e-42 Protein kinase superfamily protein (.1) AT2G34160 95 / 8e-23 Alba DNA/RNA-binding protein (.1) AT1G29250 93 / 4e-22 Alba DNA/RNA-binding protein (.1) AT3G04620 72 / 2e-14 DAN1 D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1, Alba DNA/RNA-binding protein (.1) AT3G11250 61 / 1e-09 Ribosomal protein L10 family protein (.1) AT3G09200 60 / 2e-09 Ribosomal protein L10 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043280 [exp] 441 / 6e-152 AT1G25260 351 / 3e-124 Ribosomal protein L10 family protein (.1) Lus10030073 [exp] 411 / 1e-140 AT1G25260 343 / 5e-121 Ribosomal protein L10 family protein (.1) Lus10001072 [exp] 162 / 4e-47 AT1G25260 122 / 5e-36 Ribosomal protein L10 family protein (.1) Lus10026145 [exp] 169 / 5e-45 AT1G74320 499 / 6e-176 Protein kinase superfamily protein (.1) Lus10028696 [exp] 163 / 2e-44 AT4G09760 464 / 8e-165 Protein kinase superfamily protein (.1.2.3) Lus10024127 [exp] 166 / 3e-44 AT1G74320 484 / 4e-171 Protein kinase superfamily protein (.1) Lus10028728 [exp] 162 / 8e-44 AT4G09760 469 / 1e-166 Protein kinase superfamily protein (.1.2.3) Lus10005386 [exp] 145 / 3e-37 AT1G74320 426 / 1e-148 Protein kinase superfamily protein (.1) Lus10043279 [exp] 112 / 8e-29 AT2G34160 208 / 1e-70 Alba DNA/RNA-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G120700 [exp] 525 / 0 AT2G26830 524 / 0.0 embryo defective 1187, Protein kinase superfamily protein (.1) Potri.011G156300 [exp] 376 / 5e-127 AT1G25260 353 / 5e-125 Ribosomal protein L10 family protein (.1) Potri.001G460100 [exp] 372 / 4e-125 AT1G25260 352 / 1e-124 Ribosomal protein L10 family protein (.1) Potri.003G193000 [exp] 176 / 4e-49 AT1G74320 523 / 0.0 Protein kinase superfamily protein (.1) Potri.001G032000 [exp] 171 / 3e-47 AT1G74320 531 / 0.0 Protein kinase superfamily protein (.1) Potri.002G063700 [exp] 158 / 1e-42 AT4G09760 481 / 2e-171 Protein kinase superfamily protein (.1.2.3) Potri.005G197500 [exp] 156 / 3e-41 AT4G09760 486 / 1e-172 Protein kinase superfamily protein (.1.2.3) Potri.018G029300 [exp] 88 / 3e-20 AT1G29250 180 / 1e-59 Alba DNA/RNA-binding protein (.1) Potri.006G252000 [exp] 84 / 5e-19 AT1G29250 164 / 2e-53 Alba DNA/RNA-binding protein (.1) Potri.013G042900 [exp] 75 / 2e-15 AT3G04620 179 / 2e-58 D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1, Alba DNA/RNA-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00466 [flax] [poplar] Ribosomal_L10 Ribosomal protein L10 CL0016 [flax] [poplar] PKinase PF01633 [flax] [poplar] Choline_kinase Choline/ethanolamine kinase
Representative CDS sequence Show only first row Show all	>Lus10019424 pacid=23181598 polypeptide=Lus10019424 locus=Lus10019424.g ID=Lus10019424.BGIv1.0 annot-version=v1.0 ATGGAAGAGATTACTGAGGGCGTGAACAACATGGACCTTGCCGGAGCCGATGCGAGCAAGAAGAATCGAATTCAGGTCTCTAACACCAAGAAGCCCCTCT TCCATGTTAATCTCGCTAAGAGGTATATGCAGCAGTTCAATGAGGTGGAACTATCCGCTCTTGGAATGGAAATGGGAGCTGCGGAAACGATCTCTAACGC CATGGAAGTCGTCCAACATGGAGCACGAACCAATGGCACTTGCGTCTCCTATGCGATTCCGTCTTCGTCTTGCACCGTCGACCCCGGGCTCACCATCGCT AATATGTCCCCTCGCGTCATTGGAGCTCGTGATACCTTTTATCTGGTTGTTACCATTTCCCTTTTTCTGTTCGAGATTGACAGCGAGTTGTGCAAGGATT TGTTCAAGAAGTGGTCAGATTTGGACGACTCGTGCTTCACAGTCGAGAGAGTTTCCGGCGGCATTACTAATCTTTTGTTAAAGGTATCTGTAAAGGAAAA AAATGGAGAAGAGAGCGCTATAACTGTCAGATTATATGGCCCAAACACCGACTATGTCATCAACCGTGAGCGGGAATTGCAGGCTATCAAATACCTCTCA GCTGCAGGATTTGGGGCCAAATTGCTTGGAGTATTTAAGAATGGCATGGTGCAGTCATTTATCAATGCAAGGACTCTGACACCAGCAGACATGAGTGTGC CTAAGCTGGCCGCTGAAATTGCTAAGCAACTTCGAAGGTTTCATGCAGTTGAAATACCAGGGTCCAAGGAACCTCAGTTATGGGACGAAATATTCAAGTT CTACGAGAATGCAAAGGCTCTGCGATTTGATGATGCTGAGAAGCAAAGGATATATCAGACTATCTCTTTTAAAGAAATTCACAGTGAAATCACTGAAATC CAGGAATTGACAAGCCGTTTACATTCTCCAGTGGTTTTTGCTCATAACGACTTGCTTTCTGGGAATCTGATGGTTAACGATGATGAAGGGAAACTCTACT TGATAGATTTTGAGTATGGATCATACAGTTACAGAGGTTACGATATTGGGAACCACTTCAGCGAGTATGCAGGCTATGATTGCGACTACACCTTGTATCC CAGTAAAGACCAGCAGTATCACTTTTTCAGACACTATTTACAGCCTGATAATCCAGATGAGGCAAGCAAAGAGGAGCTTGAAGCACTTTACGTGGAGTCA AACACCTTCATGTTGGCTTCACACCTATTCTGGGCCCTCTGGGCACTAATCCAGCACAAAGAAACGAGCAAAGCACTCGAAATAAAAACAAACAGAGTGC GAAGCTATAAAACCCTAGAGGGGTTTTCAGTTTCCACCGTTGCTGAAAGCTTCAAAAGCAGAGGAAACCTAATTGAGAAGCAGCTGAAGAAAGTACAAGC AGAGCCGCCGTCTCTTGAACGCCTCTGCCTCAAGTCATGCCCAAGTCCAAGCGTAATCGTGCAGAATTTTCAATGGCGATTGTGTATTTCAGTTACTCTG TCGAAGACGAAGAAGAAGGGAAGGGAACATAAAGAGGTCGTAGTAAACTCGATAAGGGATGCTGTGGAGAAATACGCTTCGGTTTACGTGTTTGGTTTCG AGAACATGCGAAATCTCAAGTTCAAGGAATTTCGAGAGCAGCTTAAGTCCAGCAGCAGATTCTTTCTCGGGTCAAACAAAGTGATGCAAGTTGCTCTTGG TCGATCTGCTGCTGACGAGCTTAGACCAGGGCTCCGCAAGGTGTCTAGGCTTCTGCGTGGAGATTCTGGTCTTCTTTGTACTAACTTGCCGAAGGAGGAA GTGGAAAGGTTATTCCGCGAATACGAAGATTATGACTTTGCACGGACTGGTTGTAAGGCCCCTGAAAAGGTGGAACTGAACGAAGGACCTCTGGAGCAGT TTACTCATGAAATGGAGCCTTTCCTGCGTAAACAAGGGTTGCCTGTCCGCTTGAACAAGAGTACTGTGGAACTTATTTCAGACTTTGTTGTCTGTGAAGA AGGAAAGCCTTTGTCACCCCAATCTGCTCGGATACTGAGATTGTTAGGGATCAAGATGGCAACCTTCCGGCTGAACTTAATCTGCAGATGGAGCTCTGAA GATTTTGAGCTTTACAGAGAGGGACTTGATGAAGGTTCAGACATTGAATCGGCATGA
AA sequence Show only first row Show all	>Lus10019424 pacid=23181598 polypeptide=Lus10019424 locus=Lus10019424.g ID=Lus10019424.BGIv1.0 annot-version=v1.0 MEEITEGVNNMDLAGADASKKNRIQVSNTKKPLFHVNLAKRYMQQFNEVELSALGMEMGAAETISNAMEVVQHGARTNGTCVSYAIPSSSCTVDPGLTIA NMSPRVIGARDTFYLVVTISLFLFEIDSELCKDLFKKWSDLDDSCFTVERVSGGITNLLLKVSVKEKNGEESAITVRLYGPNTDYVINRERELQAIKYLS AAGFGAKLLGVFKNGMVQSFINARTLTPADMSVPKLAAEIAKQLRRFHAVEIPGSKEPQLWDEIFKFYENAKALRFDDAEKQRIYQTISFKEIHSEITEI QELTSRLHSPVVFAHNDLLSGNLMVNDDEGKLYLIDFEYGSYSYRGYDIGNHFSEYAGYDCDYTLYPSKDQQYHFFRHYLQPDNPDEASKEELEALYVES NTFMLASHLFWALWALIQHKETSKALEIKTNRVRSYKTLEGFSVSTVAESFKSRGNLIEKQLKKVQAEPPSLERLCLKSCPSPSVIVQNFQWRLCISVTL SKTKKKGREHKEVVVNSIRDAVEKYASVYVFGFENMRNLKFKEFREQLKSSSRFFLGSNKVMQVALGRSAADELRPGLRKVSRLLRGDSGLLCTNLPKEE VERLFREYEDYDFARTGCKAPEKVELNEGPLEQFTHEMEPFLRKQGLPVRLNKSTVELISDFVVCEEGKPLSPQSARILRLLGIKMATFRLNLICRWSSE DFELYREGLDEGSDIESA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26830		EMB1187	embryo defective 1187, Protein...		Lus10019424 [exp]	0	1
AT2G34260		WDR55	human WDR55 \(WD40 repeat\) ho...		Lus10034796 [exp]	3.2	0.9004
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007267 [exp]	5.1	0.9207
AT2G04790			unknown protein		Lus10006402 [exp]	8.5	0.9027
AT1G09800			Pseudouridine synthase family ...		Lus10035791 [exp]	14.0	0.9060
AT3G04600			Nucleotidylyl transferase supe...		Lus10026754 [exp]	14.1	0.9142
AT1G76370			Protein kinase superfamily pro...		Lus10007041 [exp]	15.2	0.9077
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10019634 [exp]	15.7	0.9041
AT5G09380			RNA polymerase III RPC4 (.1)		Lus10019022 [exp]	16.0	0.8952
AT3G59820			LETM1-like protein (.1.2)		Lus10025602 [exp]	16.8	0.9049
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10035650 [exp]	18.7	0.9065

Compare expression of checked genes

Lus10019424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.