Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20120 110 / 3e-29 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043283 [exp] 188 / 2e-59 AT5G20120 188 / 8e-61 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G066700 [exp] 116 / 1e-31 AT5G20120 236 / 4e-80 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019426 pacid=23181558 polypeptide=Lus10019426 locus=Lus10019426.g ID=Lus10019426.BGIv1.0 annot-version=v1.0 ATGTCTGGTGGAACACCGAGAGGGGGATACGTGAGGCAGAGACATAGCCAAGGAGGCTATGGATCGAGCGGTGATGATCTGGAGGATGATGCCTGTTCGA GGCCACACCAGCATTACTTCTCTCCCACTCCGCCACGGGCTAGGTCTTGGGTGGTGATTTTGGAGAACCTGGTTTGGATTGCTTCTGCCATTTTCGTTGT TTACTATGGTGACAGACATTCCAATTTGGTGTATCTGCTGTGGCACGATGGTAGAGTTAGAAGTAAAGGATCCGTTTTGAAGAAACAAATGGGGAAGCTA TGCACGGTGAAGGTTTTGGTGGGGTTGGCATTGGGGTTTTCTGATATCTCAGCTATTTCACTTGTTCTTTCTGTCAAGTCGTATTCTTATGGTTGTGCGG TGTACATTGAAGCGATGGTTGGAGATGCTGTCTGGAATATGAAAAATACCCAGATGCTTGGCAAGTTGGAAATTCCTGTGGTAACTGACCCTGAACTTCT TTGCAGAGTGCCTTTGTACTTGGGGATGGCAGGTGTTGGTTTCAATGTACTCATCTTTTTGTACACGAGTTTATTCGCATGGAGTGTACGGAGATTTGAC GAGAAATGGGAATTGTCAAGTATAGCTGCTTTACCATGGGTTCTGTATTGCTCTGTGGCCAATATGGAGCTTCTTGACGGTTCCACTTCTGGTAAATACT TAAGCTCCCCCCCCCCTCCCCCCGGTGTTATGTTAGCTACTCGTTCACCATCAAAATCATCACTTGTCACTTATCTTCTCTTTTTGCTGCAGTTCACCTT GTTCATGTCTTTCATGATAATACTTCCTTCAGTAATAGTCGGAACGCTGAGGCAGCATGGCGATGCATTCCGTATAGATTAA
AA sequence Show only first row Show all	>Lus10019426 pacid=23181558 polypeptide=Lus10019426 locus=Lus10019426.g ID=Lus10019426.BGIv1.0 annot-version=v1.0 MSGGTPRGGYVRQRHSQGGYGSSGDDLEDDACSRPHQHYFSPTPPRARSWVVILENLVWIASAIFVVYYGDRHSNLVYLLWHDGRVRSKGSVLKKQMGKL CTVKVLVGLALGFSDISAISLVLSVKSYSYGCAVYIEAMVGDAVWNMKNTQMLGKLEIPVVTDPELLCRVPLYLGMAGVGFNVLIFLYTSLFAWSVRRFD EKWELSSIAALPWVLYCSVANMELLDGSTSGKYLSSPPPPPGVMLATRSPSKSSLVTYLLFLLQFTLFMSFMIILPSVIVGTLRQHGDAFRID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20120			unknown protein		Lus10019426 [exp]	0	1
AT5G20120			unknown protein		Lus10043283 [exp]	1.0	0.8826
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Lus10000032 [exp]	2.4	0.8637
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10017481 [exp]	3.7	0.8544
AT1G63430			Leucine-rich repeat protein ki...		Lus10001489 [exp]	5.3	0.8620
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10010151 [exp]	9.2	0.8705
AT5G18830	SBP	ATSPL7, SPL7	squamosa promoter binding prot...		Lus10012782 [exp]	19.1	0.8593
AT3G24315		ATSEC20	Sec20 family protein (.1)		Lus10014461 [exp]	19.1	0.8118
AT1G29690		CAD1	constitutively activated cell ...		Lus10025153 [exp]	23.5	0.8259
AT2G17800		ARAC1, ATGP2, A...	RHO-RELATED GTPASES FROM PLANT...		Lus10041881 [exp]	24.1	0.8434
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10039644 [exp]	40.2	0.8454

Compare expression of checked genes

Lus10019426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.