Plant FIBer expression Database

Lus10019427 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G20170 712 / 0 RNA polymerase II transcription mediators (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043284
[exp]
1240 / 0 AT5G20170 721 / 0.0 RNA polymerase II transcription mediators (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G057100
[exp]
911 / 0 AT5G20170 745 / 0.0 RNA polymerase II transcription mediators (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10156 Med17 Subunit 17 of Mediator complex
Representative CDS sequence
>Lus10019427 pacid=23181477 polypeptide=Lus10019427 locus=Lus10019427.g ID=Lus10019427.BGIv1.0 annot-version=v1.0
ATGGACGGGAACTTAGAAATCTCCATCGACAAGCTCCCCGTGAAGCGATTGGAGTCCATTGAGGAAAGTGGCGCCGAACGCTTTCCTACTGATGTTGGAT
ACGACGAGAAGCGAGTTTCGCTTATTCGTAGAGTAGATTTTGCGTGGGCATTGGAGAGGGAGGAGGACGAGAAGAAGAAGAAGCAGAAGAGTAGTAAGGA
GAGCGCTTCAGCTACACAATGGCCTTGGCAGGGAATGGTGGAGAATTTGCAATTGGCTCACCAGGAGCTATCCGTCATCATAGATCTCATTCAAACTGTG
GAAGCTAACGATGCTGTAACAGTAGCTGGTATGACCAGGCCGAAACTGTTGGCTAATGAGCACCTGGCGGATCTTGCTGTATCTACGGCAACCAAGCTAC
AATGCTACCGACAACTCGGAAAATATTTTAAGCAGTCTGCCAAAGCTTTGGATCAACAAGTTGCAAGGGAAGCAAGATTTTATGGTGCTCTAATCAGATT
GCAGCAAAACTGGAAAGTTAAACGCCTGAGACTGGTTGCACTTACCCCTGGCAATGAAGGTTTCACTTTTGACCTTTATGACAACTCATTATATGATCCA
TCAATGGTTAGGCCTACCTCTCTGTCCACCATTCGAATTGATCGTGATCCAGCTGGCATGCTTGCTATAAACTTGCCTCCGAAGTCTCTTCATTCACTTC
ATTTTGGTATTCTTGGTGTACACTCTAATACCCGTAGTAAGACATCCATTAAAGGCCGGAGCACTTCTTCAGTTGAACGTTTATCAAAAGAAAATGAGAA
TGAACAACTTGATGATAATGAGAGTGTGAAAGCAACACACTTATTGCTTCGTGAAGTTCATCAAGCAATCTTCGACGAGCAGGTGTTTGATTTAGTCAAC
CGTGAAGCAGTTAACCAATCTGCTGGGGTCAACATAACCGGAATACGAGAAAATTATCTACAACTAAACATTGGCCCGGGAGCCTCCGTATTTGTATCTG
TGACACCTTGTGATCAGGGTGAATCAACTGTTCATGGTAGAACTCCTGGGGACTCGATATCTACAGTCTTACCCATGGATTCGAGTGATGGAGCAAGGTT
GATAAAAGAAACGGATCAAGACGTCACAGAGAACTCAGGCTTCCCAAATTCTATCAGTTACGATATATTTCTACGACAGATATTCCACGAGCATCTCATT
GGAAAATCAAAGGAAAAAATGATTCCCAAAGGCACTCGCGTAGCTAGTGTCCGGCCACAGGAAGGATCCAGTCTTCTGAGCCACTTCTGCTTATCTCTGG
CTCATAGAATAATTTCAAACAAAGTTCTTATCGAGCTAGAAAAAGCGGTTGGCCGAGTCCCGTATCTACATTTGATATCTCATCCCACTTGGCATTCGAG
GTCATCTTCGTGGACGGTCACCATGCGAGTGCCGCAGACGGTGCTGCGTGCAAACTCTCAACTACAGTCATCAGACATCCAAAGCATGAAGAAGTCTACG
AAATCAGAGTTCCGGAATAAGGTGATGGTAAATGGCGATAGTATACATGTCGAAGCAGAGGGTGCTCCCAATGTTGTTGGCCTCTTCAATGGGAGTTCTA
AAGACAGATGTATTACCAACAAATATGATTGTGATTTGGCGGATCTTCCTGTCATAATTCTGCAGCAGGTTGCAAGCCAGGTTATCCGATGGCTGCACGG
GGAAGCTCTAGCGGTGGGAATGAAAGCATGCAGAGATTTCTTGTGTTTGTCATTCGAATTGGATCAAGGGGAGATACTCAGCCTTGTGGCGCATGTCGAT
TCAGACGACACGGAGGGATGTATCTCGTGGTGGTTGGTAATGGAAGACGGTGTTGCGGGAGAGCGGAAACTCCATGCGGATGGTGGATTTGAAGATGGTT
CGTCTGAGTACAGGAAGTTCTTAGGATATCTAAGCCTGGATGTGTTGCATTCGACGGTAATGGACTTGGTGAGTTTGTGCAGTGGAGGTGGAAGCCATAG
ATAA
AA sequence
>Lus10019427 pacid=23181477 polypeptide=Lus10019427 locus=Lus10019427.g ID=Lus10019427.BGIv1.0 annot-version=v1.0
MDGNLEISIDKLPVKRLESIEESGAERFPTDVGYDEKRVSLIRRVDFAWALEREEDEKKKKQKSSKESASATQWPWQGMVENLQLAHQELSVIIDLIQTV
EANDAVTVAGMTRPKLLANEHLADLAVSTATKLQCYRQLGKYFKQSAKALDQQVAREARFYGALIRLQQNWKVKRLRLVALTPGNEGFTFDLYDNSLYDP
SMVRPTSLSTIRIDRDPAGMLAINLPPKSLHSLHFGILGVHSNTRSKTSIKGRSTSSVERLSKENENEQLDDNESVKATHLLLREVHQAIFDEQVFDLVN
REAVNQSAGVNITGIRENYLQLNIGPGASVFVSVTPCDQGESTVHGRTPGDSISTVLPMDSSDGARLIKETDQDVTENSGFPNSISYDIFLRQIFHEHLI
GKSKEKMIPKGTRVASVRPQEGSSLLSHFCLSLAHRIISNKVLIELEKAVGRVPYLHLISHPTWHSRSSSWTVTMRVPQTVLRANSQLQSSDIQSMKKST
KSEFRNKVMVNGDSIHVEAEGAPNVVGLFNGSSKDRCITNKYDCDLADLPVIILQQVASQVIRWLHGEALAVGMKACRDFLCLSFELDQGEILSLVAHVD
SDDTEGCISWWLVMEDGVAGERKLHADGGFEDGSSEYRKFLGYLSLDVLHSTVMDLVSLCSGGGSHR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G20170 RNA polymerase II transcriptio... Lus10019427
[exp]
0 1
AT1G05910 cell division cycle protein 48... Lus10027038
[exp]
1.7 0.9112
AT1G73720 SMU1 SUPPRESSORS OF MEC-8 AND UNC-5... Lus10038425
[exp]
4.2 0.8913
AT1G18610 Galactose oxidase/kelch repeat... Lus10017860
[exp]
4.5 0.8915
AT4G21430 B160 Zinc finger, RING-type;Transcr... Lus10006741
[exp]
6.2 0.9053
AT5G67610 Uncharacterized conserved prot... Lus10019263
[exp]
10.0 0.8806
AT1G15750 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOP... Lus10011481
[exp]
11.2 0.8859
AT3G21100 RNA-binding (RRM/RBD/RNP motif... Lus10005023
[exp]
12.7 0.9044
AT3G21100 RNA-binding (RRM/RBD/RNP motif... Lus10019042
[exp]
13.1 0.9008
AT2G33610 CHB2, ATSWI3B CHROMATIN REMODELING COMPLEX S... Lus10016043
[exp]
15.9 0.8218
AT5G40340 Tudor/PWWP/MBT superfamily pro... Lus10014546
[exp]
16.1 0.8561

Lus10019427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.