Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60630 114 / 9e-29 Leucine-rich repeat protein kinase family protein (.1) AT1G10850 111 / 2e-27 Leucine-rich repeat protein kinase family protein (.1) AT2G26730 107 / 2e-26 Leucine-rich repeat protein kinase family protein (.1) AT4G31250 100 / 1e-23 Leucine-rich repeat protein kinase family protein (.1) AT1G72460 99 / 2e-23 Leucine-rich repeat protein kinase family protein (.1) AT5G35390 95 / 6e-22 Leucine-rich repeat protein kinase family protein (.1) AT4G22730 92 / 5e-21 Leucine-rich repeat protein kinase family protein (.1) AT1G69990 92 / 6e-21 Leucine-rich repeat protein kinase family protein (.1) AT4G23740 92 / 7e-21 Leucine-rich repeat protein kinase family protein (.1) AT3G42880 92 / 8e-21 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030067 [exp] 221 / 2e-71 AT3G50230 115 / 6e-29 Leucine-rich repeat protein kinase family protein (.1) Lus10002360 [exp] 182 / 6e-53 AT2G26730 337 / 1e-106 Leucine-rich repeat protein kinase family protein (.1) Lus10042135 [exp] 170 / 2e-48 AT2G26730 335 / 4e-106 Leucine-rich repeat protein kinase family protein (.1) Lus10032162 [exp] 154 / 1e-42 AT2G26730 321 / 1e-100 Leucine-rich repeat protein kinase family protein (.1) Lus10014525 [exp] 152 / 7e-42 AT2G26730 321 / 2e-100 Leucine-rich repeat protein kinase family protein (.1) Lus10039422 [exp] 136 / 2e-36 AT5G58300 306 / 3e-95 Leucine-rich repeat protein kinase family protein (.1.2) Lus10025210 [exp] 105 / 1e-25 AT3G08680 669 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021383 [exp] 103 / 7e-25 AT3G08680 667 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10033339 [exp] 99 / 4e-23 AT3G20190 600 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G078100 [exp] 176 / 7e-51 AT2G26730 215 / 3e-61 Leucine-rich repeat protein kinase family protein (.1) Potri.015G073500 [exp] 174 / 3e-50 AT2G26730 341 / 1e-108 Leucine-rich repeat protein kinase family protein (.1) Potri.010G097200 [exp] 99 / 3e-23 AT1G10850 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G144900 [exp] 97 / 2e-22 AT1G10850 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G121700 [exp] 96 / 3e-22 AT1G68400 760 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.016G050800 [exp] 95 / 7e-22 AT3G57830 713 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G060400 [exp] 94 / 1e-21 AT4G08850 728 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.014G002700 [exp] 94 / 1e-21 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) Potri.001G166300 [exp] 94 / 1e-21 AT3G42880 513 / 6e-174 Leucine-rich repeat protein kinase family protein (.1) Potri.003G117500 [exp] 93 / 3e-21 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10019429 pacid=23181596 polypeptide=Lus10019429 locus=Lus10019429.g ID=Lus10019429.BGIv1.0 annot-version=v1.0 ATGTCATCATCGCAATCAGAGAAGCAGGAAATAAGGCAGTCGTTAGTCATTTTCATGAAGACTCTGTCAGGAGGTAAATTTCCAACCCACCAACTGGGTT GGAACGCAACCTCTGACCCATGTCAGGACCACTGGCACGGAGTCCACTGCTACTCCTCGCAATCGGTGGGGTCAATAACCTTAAATGGGTTTCGATTCAC CGGAACTCTAGATGCCCAATCACTCTGTTCTGCTGCCAAGTCGCTGGCATTCCTAAAACTCCCCAACAACACCATTTCCGGACAAATTCCTCAGGAGATT GGTCTCTGTACAAGTTTGCTCATCTTGGATCTTAGTGATAACAATTTTTCGGGCTCGATCCCTGCGAACTTGGGAGGATGTACGAACTTAACGGTGTTGG ATTTGAGTAACAACCGCCTTTCGGGATCCATTCCCGATTCGATTCCTCGATTGACGAATCAGCCCGCGGAAGAACCTAGACTGGTATCTTTCCACGTTGA GCAAAATTTCCTGACGGGTTCGATCACGGGGTTCGATTTCGGGGTCATCGGAAGTTTTAACGTGTCGAATAATGATTTCAGTGGGCCTCTTCCTGATGGA GTTGAAAGTTTTGGAGCTGATTGCTTTTTAGGGAATGCTGGATTGTGTGGATATCCGTTGCCCAATTCGTGTCCTGACCCGAAACCCATTTGGATACCCA GTGGGTCTGGACCGGTTGGTCTGAAGGAGGTTGGGATGGGCTGGGTTTTCGTTGTTTCTGCGGGCTGGGCATTCTTGTTTCGTTGA
AA sequence Show only first row Show all	>Lus10019429 pacid=23181596 polypeptide=Lus10019429 locus=Lus10019429.g ID=Lus10019429.BGIv1.0 annot-version=v1.0 MSSSQSEKQEIRQSLVIFMKTLSGGKFPTHQLGWNATSDPCQDHWHGVHCYSSQSVGSITLNGFRFTGTLDAQSLCSAAKSLAFLKLPNNTISGQIPQEI GLCTSLLILDLSDNNFSGSIPANLGGCTNLTVLDLSNNRLSGSIPDSIPRLTNQPAEEPRLVSFHVEQNFLTGSITGFDFGVIGSFNVSNNDFSGPLPDG VESFGADCFLGNAGLCGYPLPNSCPDPKPIWIPSGSGPVGLKEVGMGWVFVVSAGWAFLFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60630			Leucine-rich repeat protein ki...		Lus10019429 [exp]	0	1
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	3.5	0.9494
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10027305 [exp]	4.7	0.8345
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	4.9	0.9494
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	6.0	0.9392
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011999 [exp]	6.9	0.9347
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007909 [exp]	7.7	0.9309
					Lus10011637 [exp]	8.5	0.9299
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10008682 [exp]	9.8	0.9229
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029377 [exp]	9.9	0.9266
AT1G52190			Major facilitator superfamily ...		Lus10008539 [exp]	10.4	0.9188

Compare expression of checked genes

Lus10019429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.