Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02160 148 / 2e-38 C3HZnF CCCH-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043286 [exp] 785 / 0 AT2G02160 171 / 2e-46 CCCH-type zinc finger family protein (.1) Lus10014490 [exp] 427 / 1e-145 AT2G02160 174 / 3e-47 CCCH-type zinc finger family protein (.1) Lus10030063 [exp] 374 / 1e-123 AT2G02160 126 / 3e-30 CCCH-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G144200 [exp] 156 / 5e-41 AT2G02160 383 / 4e-123 CCCH-type zinc finger family protein (.1) Potri.010G098200 [exp] 145 / 3e-37 AT2G02160 349 / 3e-110 CCCH-type zinc finger family protein (.1) Potri.017G031800 [exp] 42 / 0.001 AT2G47680 1242 / 0.0 zinc finger (CCCH type) helicase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019430 pacid=23181594 polypeptide=Lus10019430 locus=Lus10019430.g ID=Lus10019430.BGIv1.0 annot-version=v1.0 ATGGATGAAGAATTGCAGAAGCGAAACACCGATTGTGTTTACTTCCTCGCTTCTCCTCTCACTTGCAAGAAGGGAGCTGAGTGCGAGTACCGGCACAGCG AGATGGCGAGGCTTAACCCTAGGGATTGCTGGTTCTGGTTGTCTGGTACCTGTCTTAATCCCACCTGCGCTTTCAGACACCCTCCTCTGGAAAAGCCAGC TGAAACACCTTCGGAATCTGGTGCCGTTCCTACTCAGGCTCCTCGACCCACAAACAAGCCTACTGTCCCTTGTTTCTTCTACTTCCAAGGGTTCTGTGGT AAAGGGGATAAATGTACCTTCTCTCATAGTCCTGATGGTAGCATACCTGCTGCAAAATCTTTCAAGGTTCCTTCTACTACCAACTCGGATGTTCGTCCAG TGGAGAATAATAAGAATTCAACAGGAAACAAAACTGCAGCTGCACCAACTGAGCCACGAAATAATCTGTCTGTAACGCCTAAGAAGCCATCAGCTAATGT GAAATTACAATCTAGACCGAAAGTACAGCAGCAGCTAGTCCCTAAAGTTGCAGTACAGAAGAGTTCCTCTCTAGAGACTGCTGCGTCCAATGGAGAGAGA GTTGGTGTTATTGATTCAGATTCTATGTTGCCATCAGAAAACTACAACGAGGATAGATCATACACCGGTGCTGATCAGAATTCGGAAGAACATGTTGACG AGCATGTTGAACCAGAAGAGCGGTGGGAATCGTCACCGGGCTTTGATGTTCTCGTGGATAACGAGGAGGAGGAGGAGAATCATCTTCACTATGAGGCTGA GCAGGAATATGTGGCTGCCCTCGATGGAGAACAGAGGGAGGTAGATAATCGATTTGCAGAATATGGTTTTGAGGAATCAGTTCGACATGAAGAGCCATTG GGCTATAGTCAAAGTGGAGAAATGGATCTTCGAGACCGCCTGAGGAAACGACGGGCTGTTGGCAATGAGCCATTCACCAGATCATCAAGAAGGCGTGACG ACACAAGACCATATGAGCATGGACTAAGTGAAAGGCTACGTGGAAGATTGGCATCTGAGGTTGGTAGGGCCGGAATCAGACCCATCGACGATTATGGTAT TCATATGAATGGTGGTAGTCATCATGGCCGGCTCAGACACTCCCAGTTCGACTGGCCGAGGGAATACAGAGAAAGAACGGGAGCTCCTAGGAGGCCTTTC ATACCTTCAGATGTCCGGAGGAGGCCATTTGCAAGAGAGAGGAGGTCGAGCGAGGCATGTGGGGAATTCTCGGCGCCAAAGAGCCTTGCGGAAATAAAAG AAGAGAAGAGAAGGGCTGAAGAAAATGGGTACCAGAATGCGAGAGATGAGGACATGGATGGAATAGAATCAGTGAATTTCGACGGTCCGAAGCCTCTGAA TGAAATCCTAAAGGAGAAAAAGAAGTTGGGTTCTTCTGTAGAGTACGATAACGGCAGTTGCAGCAACTGA
AA sequence Show only first row Show all	>Lus10019430 pacid=23181594 polypeptide=Lus10019430 locus=Lus10019430.g ID=Lus10019430.BGIv1.0 annot-version=v1.0 MDEELQKRNTDCVYFLASPLTCKKGAECEYRHSEMARLNPRDCWFWLSGTCLNPTCAFRHPPLEKPAETPSESGAVPTQAPRPTNKPTVPCFFYFQGFCG KGDKCTFSHSPDGSIPAAKSFKVPSTTNSDVRPVENNKNSTGNKTAAAPTEPRNNLSVTPKKPSANVKLQSRPKVQQQLVPKVAVQKSSSLETAASNGER VGVIDSDSMLPSENYNEDRSYTGADQNSEEHVDEHVEPEERWESSPGFDVLVDNEEEEENHLHYEAEQEYVAALDGEQREVDNRFAEYGFEESVRHEEPL GYSQSGEMDLRDRLRKRRAVGNEPFTRSSRRRDDTRPYEHGLSERLRGRLASEVGRAGIRPIDDYGIHMNGGSHHGRLRHSQFDWPREYRERTGAPRRPF IPSDVRRRPFARERRSSEACGEFSAPKSLAEIKEEKRRAEENGYQNARDEDMDGIESVNFDGPKPLNEILKEKKKLGSSVEYDNGSCSN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Lus10019430 [exp]	0	1
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Lus10043286 [exp]	1.7	0.8732
AT4G22350			Ubiquitin C-terminal hydrolase...		Lus10010490 [exp]	3.9	0.8509
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Lus10016246 [exp]	10.2	0.8382
AT5G07900			Mitochondrial transcription te...		Lus10040817 [exp]	10.5	0.8514
AT1G02870			unknown protein		Lus10002436 [exp]	20.5	0.8034
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Lus10002063 [exp]	27.3	0.8237
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Lus10029481 [exp]	27.5	0.8121
AT2G36350			Protein kinase superfamily pro...		Lus10035591 [exp]	31.0	0.8253
AT5G61370			Pentatricopeptide repeat (PPR)...		Lus10000564 [exp]	35.2	0.8023
AT2G27130			Bifunctional inhibitor/lipid-t...		Lus10026768 [exp]	36.0	0.7993

Compare expression of checked genes

Lus10019430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.