Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20140 187 / 1e-61 ASK4 SKP1-like 4 (.1) AT2G25700 182 / 1e-59 ASK3 SKP1-like 3 (.1) AT5G42190 180 / 6e-59 SKP1B, ASK2 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) AT4G34210 179 / 9e-59 ASK11 SKP1-like 11 (.1) AT1G75950 178 / 2e-58 UIP1, SKP1A, ATSKP1, ASK1, SKP1 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) AT4G34470 178 / 2e-58 ASK12 SKP1-like 12 (.1) AT3G60010 170 / 3e-55 ASK13 SKP1-like 13 (.1) AT3G60020 166 / 1e-53 ASK5 SKP1-like 5 (.1) AT2G03170 166 / 2e-53 ASK14 SKP1-like 14 (.1) AT3G21850 163 / 2e-52 ASK9 SKP1-like 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005610 [exp] 189 / 3e-62 AT5G42190 261 / 2e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10017282 [exp] 188 / 3e-62 AT5G42190 259 / 6e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10017281 [exp] 188 / 4e-62 AT5G42190 259 / 4e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10019794 [exp] 188 / 4e-62 AT1G75950 241 / 8e-83 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Lus10013575 [exp] 186 / 4e-61 AT1G75950 255 / 2e-88 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Lus10041874 [exp] 182 / 1e-59 AT4G34210 201 / 3e-67 SKP1-like 11 (.1) Lus10014115 [exp] 186 / 3e-56 AT1G68010 700 / 0.0 hydroxypyruvate reductase (.1.2) Lus10002803 [exp] 164 / 1e-52 AT1G20140 189 / 3e-62 SKP1-like 4 (.1) Lus10043288 [exp] 121 / 3e-36 AT2G25700 62 / 4e-19 SKP1-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G135800 [exp] 193 / 3e-64 AT1G20140 215 / 9e-73 SKP1-like 4 (.1) Potri.002G018700 [exp] 192 / 6e-64 AT5G42190 249 / 6e-86 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.005G243100 [exp] 191 / 2e-63 AT1G75950 244 / 2e-84 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Potri.004G175900 [exp] 190 / 8e-63 AT5G42190 245 / 2e-84 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.005G109900 [exp] 186 / 2e-61 AT5G42190 249 / 5e-86 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.012G085200 [exp] 142 / 3e-44 AT4G34210 157 / 7e-50 SKP1-like 11 (.1) Potri.005G094800 [exp] 120 / 6e-35 AT3G21860 114 / 2e-32 SKP1-like 10 (.1) Potri.012G086900 [exp] 108 / 1e-30 AT4G34210 130 / 1e-39 SKP1-like 11 (.1) Potri.001G132300 [exp] 100 / 1e-27 AT1G75950 122 / 3e-36 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Potri.016G028300 [exp] 81 / 1e-19 AT2G03170 79 / 6e-19 SKP1-like 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF03931 [flax] [poplar] Skp1_POZ Skp1 family, tetramerisation domain CL0033 [flax] [poplar] PF01466 [flax] [poplar] Skp1 Skp1 family, dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10019432 pacid=23181600 polypeptide=Lus10019432 locus=Lus10019432.g ID=Lus10019432.BGIv1.0 annot-version=v1.0 ATGTCGTTCACCCTGAAGAGCAGCGACGGGAAGTTGTTCCAAGTAGACGAGGCGGTGGCTATGGAATCGCAGACAATCAAGAACCTAATTGAGGATGGTT GTGCTGACGACGAAATTCCCATCACCAACGTCACCGCCCATACATTGGCTCTAGTGATCGACTACTGCAAGAAGCACACCGACAACAACATCGCCAATAA CAGCGAGGATCTGAAACAGTGGGACGCCGAGTTCATGAAAGTGGATCAGGCTACGCTCTACGACATTACAATGGCTGCCAACTATCTGAACATCAAGGGG CTGTTGGATCTCGCATGCCAAATTGTGGCAAACAGCATCAAGGGAAAGACTCCACAGCAAATAAGGGACCATTACGGCATCCAAAACGACTTCTCCCCAG AGGAGGAGGAAAAGATTCGCAGGGAGAACCAGTGGGCATTTGAATGA
AA sequence Show only first row Show all	>Lus10019432 pacid=23181600 polypeptide=Lus10019432 locus=Lus10019432.g ID=Lus10019432.BGIv1.0 annot-version=v1.0 MSFTLKSSDGKLFQVDEAVAMESQTIKNLIEDGCADDEIPITNVTAHTLALVIDYCKKHTDNNIANNSEDLKQWDAEFMKVDQATLYDITMAANYLNIKG LLDLACQIVANSIKGKTPQQIRDHYGIQNDFSPEEEEKIRRENQWAFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20140		ASK4	SKP1-like 4 (.1)		Lus10019432 [exp]	0	1
AT3G20300			Protein of unknown function (D...		Lus10002334 [exp]	6.3	0.8427
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10029865 [exp]	8.4	0.8478
AT5G22090			Protein of unknown function (D...		Lus10013353 [exp]	10.1	0.8482
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10004581 [exp]	14.1	0.8474
AT1G09170			P-loop nucleoside triphosphate...		Lus10020682 [exp]	16.6	0.8406
AT5G44670			Domain of unknown function (DU...		Lus10038387 [exp]	20.4	0.8421
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10012257 [exp]	20.8	0.8006
AT4G19370			Protein of unknown function (D...		Lus10035672 [exp]	21.6	0.8228
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10028848 [exp]	21.7	0.8329
AT1G63300			Myosin heavy chain-related pro...		Lus10038860 [exp]	22.1	0.7927

Compare expression of checked genes

Lus10019432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.