Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26695 199 / 2e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT3G15680 111 / 6e-31 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT5G25490 108 / 9e-30 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT2G17975 67 / 4e-13 zinc finger (Ran-binding) family protein (.1) AT2G36660 66 / 3e-12 PAB7 poly(A) binding protein 7 (.1) AT1G48570 64 / 6e-12 zinc finger (Ran-binding) family protein (.1) AT1G70650 49 / 1e-06 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT4G34110 48 / 2e-06 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT1G55040 47 / 6e-06 zinc finger (Ran-binding) family protein (.1) AT1G22760 45 / 2e-05 PAB3 poly(A) binding protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043289 [exp] 266 / 2e-91 AT2G26695 198 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10030054 [exp] 206 / 2e-68 AT2G26695 196 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10033023 [exp] 210 / 3e-67 AT2G26695 202 / 4e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10002896 [exp] 107 / 6e-29 AT3G15680 181 / 9e-59 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10002032 [exp] 105 / 2e-28 AT3G15680 182 / 3e-59 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10027733 [exp] 87 / 2e-19 AT2G36660 569 / 0.0 poly(A) binding protein 7 (.1) Lus10035556 [exp] 86 / 3e-19 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10014392 [exp] 75 / 2e-15 AT2G36660 594 / 0.0 poly(A) binding protein 7 (.1) Lus10023885 [exp] 70 / 1e-13 AT2G36660 570 / 0.0 poly(A) binding protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G149900 [exp] 195 / 3e-64 AT2G26695 177 / 2e-58 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.018G066900 [exp] 189 / 6e-61 AT2G26695 177 / 2e-57 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.003G061300 [exp] 126 / 7e-37 AT3G15680 161 / 2e-51 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.001G172700 [exp] 118 / 8e-34 AT3G15680 170 / 7e-55 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.018G029900 [exp] 115 / 1e-32 AT3G15680 176 / 4e-57 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.006G251300 [exp] 113 / 2e-31 AT3G15680 167 / 1e-53 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.012G046500 [exp] 68 / 3e-13 AT1G48570 338 / 3e-110 zinc finger (Ran-binding) family protein (.1) Potri.015G038200 [exp] 68 / 3e-13 AT1G48570 335 / 4e-111 zinc finger (Ran-binding) family protein (.1) Potri.005G115100 [exp] 59 / 2e-10 AT2G17975 328 / 4e-113 zinc finger (Ran-binding) family protein (.1) Potri.005G198500 [exp] 50 / 3e-07 AT1G22760 623 / 0.0 poly(A) binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00641 [flax] [poplar] zf-RanBP Zn-finger in Ran binding protein and others CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10019433 pacid=23181588 polypeptide=Lus10019433 locus=Lus10019433.g ID=Lus10019433.BGIv1.0 annot-version=v1.0 ATGAGCTGGACGGGAGGTGACTGGATGTGCCCAGCGTGTCAGCACCAGAACTTCAAGAAGAGGGAGAGCTGCCAGCGATGCGGCTACCCGAAATATGGAG GCCCTGACGTGGCAACCTACCTGTACAACAGGACAGAGGTGCTGGCAGGGGACTGGTATTGCGCCCCTTGTGGCTCCCACAACTATGCCAGCAGGGCCTC CTGCTTCAGGTGTGGTCAAGTTAAGATTGACTATGCTGCTGGTTATGCTTCTGACTCTGGCATGCCTCCTGGATGGAAGACTGGCGATTGGGTCTGCTCT AGGATGGGATGCGGTAGCCACAATTTTGCTAGCAGGGGTGAATGCTTCAAATGCAGGACACCAAGGGAATATGGGCCAGTCGTCGACACTACTATTGTAC ATCCGAGAAACTATAACCTTTTACATGCTGGCCTCTTTGATGTTAGGGGCGTAGATTTGACCTGTCAGACTTCAATTTTCAAGAGTCTCGGTTCATTGGT GACCGAGATCCCCAGATCTCACCATCACTCATGGGAATCTGTTACGAATGCTGCTCTGCAAGAGCTGTTCGGCAAACATGGGAATATTGTGTCTTGTAAA ATAGCGACCTTTGATGATGGAAGGACTAAAGGCCATGGTTTTGTCCAATTTAATAACTGA
AA sequence Show only first row Show all	>Lus10019433 pacid=23181588 polypeptide=Lus10019433 locus=Lus10019433.g ID=Lus10019433.BGIv1.0 annot-version=v1.0 MSWTGGDWMCPACQHQNFKKRESCQRCGYPKYGGPDVATYLYNRTEVLAGDWYCAPCGSHNYASRASCFRCGQVKIDYAAGYASDSGMPPGWKTGDWVCS RMGCGSHNFASRGECFKCRTPREYGPVVDTTIVHPRNYNLLHAGLFDVRGVDLTCQTSIFKSLGSLVTEIPRSHHHSWESVTNAALQELFGKHGNIVSCK IATFDDGRTKGHGFVQFNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10019433 [exp]	0	1
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10043289 [exp]	1.0	0.9440
AT5G07980			dentin sialophosphoprotein-rel...		Lus10034692 [exp]	6.5	0.8327
					Lus10007128 [exp]	8.9	0.8163
AT1G06260			Cysteine proteinases superfami...		Lus10017674 [exp]	9.9	0.7805
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10024649 [exp]	12.2	0.7713
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006855 [exp]	12.8	0.8169
AT1G28250			unknown protein		Lus10015429 [exp]	18.4	0.7576
AT5G47180			Plant VAMP (vesicle-associated...		Lus10011004 [exp]	19.9	0.7836
AT1G60010			unknown protein		Lus10029193 [exp]	20.4	0.7573
AT1G66570		ATSUC7	sucrose-proton symporter 7 (.1...		Lus10028615 [exp]	20.6	0.6881

Compare expression of checked genes

Lus10019433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.