Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 323 / 4e-109 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06650 313 / 3e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G03410 310 / 2e-103 2A6 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06640 301 / 3e-100 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G59530 300 / 3e-100 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G61400 300 / 1e-99 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 300 / 1e-99 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G06645 297 / 9e-99 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G04350 291 / 2e-96 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30840 289 / 1e-95 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001108 [exp] 550 / 0 AT1G06620 362 / 2e-124 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10002892 [exp] 436 / 3e-153 AT1G06620 381 / 1e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10000426 [exp] 431 / 4e-151 AT1G06620 412 / 5e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001118 [exp] 431 / 4e-151 AT1G06620 412 / 5e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001109 [exp] 404 / 1e-140 AT1G06620 379 / 4e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10002888 [exp] 399 / 6e-139 AT1G06620 384 / 7e-133 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 376 / 2e-129 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037796 [exp] 372 / 3e-128 AT1G06620 442 / 4e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017080 [exp] 368 / 8e-127 AT1G06620 440 / 3e-155 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073166 [exp] 353 / 8e-121 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 352 / 3e-120 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073232 [exp] 330 / 2e-111 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 318 / 5e-107 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.011G156200 [exp] 297 / 1e-98 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.008G165400 [exp] 296 / 2e-98 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 285 / 4e-94 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 281 / 3e-92 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.013G045000 [exp] 278 / 1e-91 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 272 / 9e-89 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10019435 pacid=23181573 polypeptide=Lus10019435 locus=Lus10019435.g ID=Lus10019435.BGIv1.0 annot-version=v1.0 ATGGGTTCGACAGTGGAGGAGTATGATATAGTTGCTGAATGCAAGGCATTCGACGAAACGAAAGCAGGAGTGAAAGGGCTTGTGGATTCAGGAATCAAAG AGATCCCTCGAATGTTCCACATGCCACCGCATATGATGGACCATGGATCGCCCGTTCCAGCAGTCGACGATCCAGACTTCATTTTCCCAATCATAGACCT TGCGGGAGGCCAACAAGACCCCGAGAAGCGTAAGCAGATTGTTGAGAAAATCGGAGACGCTGCTAAAAATTGGGGATTCTTCCAAATCGTAAACCATGGA GTAGCTGTTGAAACCCTGGAGGAGATGATAGCAGGAGTCCACAGAATCTTTAACCAAGACGTTGAGCTGAAGAAGAAAGTGGGTGTAGACATGACGAAAC CGGTTGTTTACTACCCAAGCTACACCTCTGAAGCTGCAAACTGGAGGGATTCCATCCTCTACCGTATGATGCCAAACCCCCCTGAAGAAGAGGAATTGCC CGCTTGCTCTAGGGATATCTTGCCCAAGTATTCCGCCGAAATGCTGAAAGTTGGGGAGTCGGTTTTCGAATTGCTGTCTGAGGCTTTGAGTCTACCCTCA GATCACTTGAAGGAATTGGACTGCATGGAAGTACTGGCATTAGGTTGCCATTACTATCCAGCTTGTCCTCAACCAGAGCTCACTCTGGGAAGTATTTGCC ATGCTGACCTCGATTTTATTACACTTCTTCTACAAGATGATGTCGGAGGTCTTCAGATTCGTCGCAAGGGCCACTGGGTCGATGTCCCTTTTACCAAGGG AGCCATAGTAGTCAACATCGGAGAGATGCTTCAGCTGATATCTAATGACAAATTTACAAGTGTTGAGCATAGAGTGATAGCCCAACACGCTGGTCCACGA ATCTCAATAGCAAGCTTTTTCGGGAATGGATTCTCAGTCAAGTCCAGAATGTATGGACCCATCAAAGAAACATTATCGGAAGACAACCCTCCCATGTACA AGGAGACAACAATTACAGATTTCTTTGCCCTCACCTACAGAAACGGCATTGGTAAATCAGTTCTGCCACTGCTTAAACTCTGA
AA sequence Show only first row Show all	>Lus10019435 pacid=23181573 polypeptide=Lus10019435 locus=Lus10019435.g ID=Lus10019435.BGIv1.0 annot-version=v1.0 MGSTVEEYDIVAECKAFDETKAGVKGLVDSGIKEIPRMFHMPPHMMDHGSPVPAVDDPDFIFPIIDLAGGQQDPEKRKQIVEKIGDAAKNWGFFQIVNHG VAVETLEEMIAGVHRIFNQDVELKKKVGVDMTKPVVYYPSYTSEAANWRDSILYRMMPNPPEEEELPACSRDILPKYSAEMLKVGESVFELLSEALSLPS DHLKELDCMEVLALGCHYYPACPQPELTLGSICHADLDFITLLLQDDVGGLQIRRKGHWVDVPFTKGAIVVNIGEMLQLISNDKFTSVEHRVIAQHAGPR ISIASFFGNGFSVKSRMYGPIKETLSEDNPPMYKETTITDFFALTYRNGIGKSVLPLLKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10019435 [exp]	0	1
AT2G15220			Plant basic secretory protein ...		Lus10026585 [exp]	1.7	0.7080
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001036 [exp]	3.7	0.7058
AT4G34880			Amidase family protein (.1)		Lus10034477 [exp]	5.7	0.6314
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10024623 [exp]	7.9	0.6694
AT3G21260		GLTP3	GLYCOLIPID TRANSFER PROTEIN 3,...		Lus10018917 [exp]	10.8	0.6974
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10034859 [exp]	18.5	0.6282
AT4G25190		QWRF7	QWRF domain containing 7, Fami...		Lus10009604 [exp]	22.0	0.6250
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001037 [exp]	23.4	0.6407
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10002611 [exp]	32.3	0.5997
					Lus10028652 [exp]	34.8	0.5993

Compare expression of checked genes

Lus10019435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.