Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25910 254 / 3e-82 Protein of unknown function (DUF1644) (.1) AT3G24740 183 / 6e-55 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G68140 173 / 1e-51 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) AT4G08460 155 / 3e-45 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) AT4G31410 142 / 8e-40 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G80220 140 / 2e-39 Protein of unknown function (DUF1644) (.1) AT1G15430 139 / 3e-39 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G77770 136 / 6e-38 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT2G26050 97 / 8e-24 Protein of unknown function (DUF1644) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043292 [exp] 529 / 0 AT3G25910 282 / 2e-93 Protein of unknown function (DUF1644) (.1) Lus10022809 [exp] 188 / 5e-57 AT3G24740 351 / 1e-120 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10011876 [exp] 187 / 8e-56 AT3G24740 358 / 5e-122 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10025356 [exp] 179 / 7e-55 AT1G68140 282 / 3e-95 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10004940 [exp] 178 / 3e-53 AT1G68140 319 / 4e-108 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10020957 [exp] 177 / 3e-53 AT1G68140 309 / 1e-104 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10009772 [exp] 170 / 1e-50 AT4G08460 256 / 3e-85 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10026800 [exp] 167 / 2e-49 AT3G25910 149 / 1e-42 Protein of unknown function (DUF1644) (.1) Lus10024758 [exp] 160 / 9e-47 AT4G08460 251 / 8e-83 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G154300 [exp] 315 / 1e-106 AT3G25910 152 / 8e-43 Protein of unknown function (DUF1644) (.1) Potri.018G070500 [exp] 313 / 7e-106 AT3G25910 246 / 2e-79 Protein of unknown function (DUF1644) (.1) Potri.003G060800 [exp] 204 / 6e-62 AT3G25910 188 / 3e-55 Protein of unknown function (DUF1644) (.1) Potri.003G021800 [exp] 180 / 8e-54 AT1G68140 315 / 2e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.002G216600 [exp] 176 / 2e-52 AT3G24740 334 / 2e-113 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.002G088700 [exp] 173 / 2e-51 AT4G08460 245 / 2e-80 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.001G208800 [exp] 171 / 1e-50 AT1G68140 312 / 6e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.005G172300 [exp] 169 / 4e-50 AT4G08460 219 / 2e-70 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.018G006400 [exp] 157 / 2e-45 AT4G31410 331 / 2e-113 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.006G275400 [exp] 152 / 1e-43 AT4G31410 311 / 4e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF07800 [flax] [poplar] DUF1644 Protein of unknown function (DUF1644)
Representative CDS sequence Show only first row Show all	>Lus10019436 pacid=23181488 polypeptide=Lus10019436 locus=Lus10019436.g ID=Lus10019436.BGIv1.0 annot-version=v1.0 ATGCCGAAGCATAGAAGAGATCGTTCTAGGTCTTTAGATAGGTCATCTCCCTATGCAAGTAGTTCGAAAAGAACCAGACTTGGTTCGTCGAAAGCATCTC CCGAGACCGATGAAAATGTAAAGGAATGGGAAGATGCTCGGTGCCCTGTCTGTATGGAGCATCCTCATAATGCTATTCTTCTTATATGCTCCTCTCATGA TAAAGGTTGCCGTCCATACATGTGTGATACGAGTTATCGTCACTCCAACTGTTTCGATCAGTTCTGTAAATCATTTGAGCAGACATCAGAAACGACCACC GAGATGCCAGACGAAAATAGTGATATGATCACGAGTGAGCTGGTCAGTAATACCGATGTGACTACTCCTTCAACATTAGAAGGGATAGTCTCTGCTGGAA ATACTTGTGATAACAAGGTGCCACCTCAGCTGCTGTGTCCCTTATGTAGAGGAGATATAACGACTTGGGTTGTCCTCGAGCCTGCTCGAGATTTCATGAA TGCGAAATCGAGGAGCTGTGCCTGTGAGATGTGCGATTTTAATGGCACATATGCAGATCTTAGGAAGCATGCTAGGCATGAACATCCTCTTGTTCGACCG TCGGAGGCTGATCCCGAAAGGGAACGCAACTGGAGGAGGCTAGAGCAGGAGAGGGATTTGGGGGACCTGCTCAGTACGCTCCAGTCTTCGTTCGGGGAAG AGAGGGTAGGAGATGAGAGTGGTTGGCTTACTGTGATTTTCTTTATAAGGATACTCCGACCAGGGTCCGGTGCAAGGAGCAGCACCACACGGTCAGGTGG CACGAGAACTAGAACACGATTGTTGAGCTTTCGGAGGCGTTCCACAAGATTGCTGGGGGAGACTCAGGTTGAAGAAGAAAATGCATCTTCTTCCAGAGAC GAGGAGAACAATACGACATGGGATGGGGGTTCGTCAGTCCCTTTGAGGCGCAGTGAGCGCCTTAGGCAGCGGAGGAGAACACCCGACTTGTCATGA
AA sequence Show only first row Show all	>Lus10019436 pacid=23181488 polypeptide=Lus10019436 locus=Lus10019436.g ID=Lus10019436.BGIv1.0 annot-version=v1.0 MPKHRRDRSRSLDRSSPYASSSKRTRLGSSKASPETDENVKEWEDARCPVCMEHPHNAILLICSSHDKGCRPYMCDTSYRHSNCFDQFCKSFEQTSETTT EMPDENSDMITSELVSNTDVTTPSTLEGIVSAGNTCDNKVPPQLLCPLCRGDITTWVVLEPARDFMNAKSRSCACEMCDFNGTYADLRKHARHEHPLVRP SEADPERERNWRRLEQERDLGDLLSTLQSSFGEERVGDESGWLTVIFFIRILRPGSGARSSTTRSGGTRTRTRLLSFRRRSTRLLGETQVEEENASSSRD EENNTTWDGGSSVPLRRSERLRQRRRTPDLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25910			Protein of unknown function (D...		Lus10019436 [exp]	0	1
AT4G30790			unknown protein		Lus10005509 [exp]	3.2	0.9456
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10014068 [exp]	4.5	0.9570
AT2G41250			Haloacid dehalogenase-like hyd...		Lus10010452 [exp]	4.9	0.9447
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Lus10033721 [exp]	5.7	0.9540
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10008117 [exp]	5.8	0.9412
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10009808 [exp]	7.9	0.9552
AT4G25680			PPPDE putative thiol peptidase...		Lus10038841 [exp]	8.1	0.9246
AT5G09640		SNG2, SCPL19	SINAPOYLGLUCOSE ACCUMULATOR 2,...		Lus10007731 [exp]	8.2	0.9508
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10038940 [exp]	10.1	0.9492
AT5G24890			unknown protein		Lus10009793 [exp]	10.6	0.9485

Compare expression of checked genes

Lus10019436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.