Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17486 241 / 2e-80 PPPDE putative thiol peptidase family protein (.1.2) AT5G47310 226 / 2e-74 PPPDE putative thiol peptidase family protein (.1) AT1G47740 204 / 3e-65 PPPDE putative thiol peptidase family protein (.1.2) AT5G25170 188 / 5e-60 PPPDE putative thiol peptidase family protein (.1) AT2G25190 186 / 1e-58 PPPDE putative thiol peptidase family protein (.1) AT4G31980 188 / 2e-55 unknown protein AT1G80690 170 / 9e-53 PPPDE putative thiol peptidase family protein (.1) AT4G25680 73 / 4e-15 PPPDE putative thiol peptidase family protein (.1) AT4G25660 71 / 2e-14 PPPDE putative thiol peptidase family protein (.1) AT3G07090 67 / 5e-13 PPPDE putative thiol peptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043293 [exp] 479 / 3e-174 AT4G17486 243 / 3e-81 PPPDE putative thiol peptidase family protein (.1.2) Lus10013657 [exp] 349 / 5e-123 AT4G17486 243 / 1e-81 PPPDE putative thiol peptidase family protein (.1.2) Lus10033030 [exp] 328 / 2e-114 AT4G17486 225 / 3e-74 PPPDE putative thiol peptidase family protein (.1.2) Lus10040170 [exp] 241 / 1e-80 AT4G17486 283 / 9e-98 PPPDE putative thiol peptidase family protein (.1.2) Lus10004755 [exp] 229 / 6e-76 AT4G17486 273 / 2e-93 PPPDE putative thiol peptidase family protein (.1.2) Lus10007844 [exp] 226 / 9e-75 AT4G17486 277 / 3e-95 PPPDE putative thiol peptidase family protein (.1.2) Lus10004372 [exp] 216 / 4e-67 AT5G47310 244 / 1e-77 PPPDE putative thiol peptidase family protein (.1) Lus10032708 [exp] 201 / 1e-64 AT1G47740 357 / 1e-125 PPPDE putative thiol peptidase family protein (.1.2) Lus10003951 [exp] 201 / 2e-64 AT1G47740 358 / 8e-126 PPPDE putative thiol peptidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G154400 [exp] 322 / 2e-112 AT4G17486 220 / 8e-73 PPPDE putative thiol peptidase family protein (.1.2) Potri.018G070600 [exp] 320 / 1e-111 AT4G17486 235 / 1e-78 PPPDE putative thiol peptidase family protein (.1.2) Potri.003G080300 [exp] 252 / 9e-85 AT5G47310 295 / 9e-102 PPPDE putative thiol peptidase family protein (.1) Potri.001G154400 [exp] 249 / 2e-83 AT5G47310 308 / 4e-107 PPPDE putative thiol peptidase family protein (.1) Potri.002G134200 [exp] 208 / 2e-67 AT1G47740 346 / 3e-121 PPPDE putative thiol peptidase family protein (.1.2) Potri.014G042300 [exp] 206 / 1e-66 AT1G47740 339 / 2e-118 PPPDE putative thiol peptidase family protein (.1.2) Potri.T126004 [exp] 204 / 7e-66 AT1G47740 337 / 2e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.009G113168 [exp] 203 / 2e-65 AT1G47740 335 / 6e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.004G151200 [exp] 201 / 2e-64 AT1G47740 335 / 1e-116 PPPDE putative thiol peptidase family protein (.1.2) Potri.018G021700 [exp] 200 / 2e-64 AT5G25170 301 / 2e-104 PPPDE putative thiol peptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05903 [flax] [poplar] Peptidase_C97 PPPDE putative peptidase domain
Representative CDS sequence Show only first row Show all	>Lus10019437 pacid=23181565 polypeptide=Lus10019437 locus=Lus10019437.g ID=Lus10019437.BGIv1.0 annot-version=v1.0 ATGGGGGCTGCTTCAGAAGCAATCTTGGATCATTCCAGCTCCGAGAAGGAGAATTCCGACGAAAGCGCCGAAACTCTGGTCTTGTTAAACGTCTACGACC TCACCTCTGTTAACAATTACACTTATTGGTTCGGCTTTGGGATTTTCCACTCCGGCATTGAAGTTCGTGGTAAAGAGTATGGCTTTGGAGCTCATGATTT CCCGATTAGTGGAGTGTTTGAAGTTGAGCCAAGAAACTGCCCAGGTTTCATTTACAGATGCTCCATCCCACTAGGGCTCATATCAATGCATCATAGTGAG TTGAGGACATTCATGGAGAGGATGGCTTCTGAGTATCACGGTGACACGTACCACCTCATCTCCAAGAACTGCAACCATTTTACAGATGATGTCAGCTACC GGTTGGTTGGAAAGAGCATACCGGGTTTCGTAAACCGACTTGCCCGGCTTGGTGCTCTATGTAGTTGTTTGCTTCCCGAAAGCCTTCAAGTTACTGCAGT GAAACAACTACCTGAACACCATGACTTTTTGGAAGAAGATGGAAGTGAGTCTGTGACAACTGCCTCCCCGTCGTGTGGGTCTACAGAAATCGACGACGAG GATGAAGATAAGCATCTGTTGTCACCAAGGAATGGAGCTTCTGGAGAAATCTCATTTGTGAAAGAGAGATGTGGGACGGAAAACAAGCCACCTCCATTAC AAGAATTTGTGAGCAGAAGAAATGGGATAGAATAG
AA sequence Show only first row Show all	>Lus10019437 pacid=23181565 polypeptide=Lus10019437 locus=Lus10019437.g ID=Lus10019437.BGIv1.0 annot-version=v1.0 MGAASEAILDHSSSEKENSDESAETLVLLNVYDLTSVNNYTYWFGFGIFHSGIEVRGKEYGFGAHDFPISGVFEVEPRNCPGFIYRCSIPLGLISMHHSE LRTFMERMASEYHGDTYHLISKNCNHFTDDVSYRLVGKSIPGFVNRLARLGALCSCLLPESLQVTAVKQLPEHHDFLEEDGSESVTTASPSCGSTEIDDE DEDKHLLSPRNGASGEISFVKERCGTENKPPPLQEFVSRRNGIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17486			PPPDE putative thiol peptidase...		Lus10019437 [exp]	0	1
AT2G26730			Leucine-rich repeat protein ki...		Lus10001900 [exp]	3.3	0.8537
AT1G60010			unknown protein		Lus10029193 [exp]	4.5	0.8014
AT4G17486			PPPDE putative thiol peptidase...		Lus10043293 [exp]	6.3	0.8252
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10023910 [exp]	6.3	0.7934
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012871 [exp]	8.5	0.8513
AT5G35670		IQD33	IQ-domain 33 (.1)		Lus10000919 [exp]	12.4	0.7969
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012868 [exp]	14.8	0.8262
AT3G29680			HXXXD-type acyl-transferase fa...		Lus10029798 [exp]	15.9	0.7995
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10012502 [exp]	16.3	0.7609
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10024228 [exp]	17.1	0.8221

Compare expression of checked genes

Lus10019437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.