Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20060 377 / 2e-133 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G52700 330 / 4e-115 alpha/beta-Hydrolases superfamily protein (.1) AT3G15650 320 / 6e-111 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G52695 154 / 2e-46 alpha/beta-Hydrolases superfamily protein (.1) AT1G47786 120 / 1e-33 alpha/beta-Hydrolases superfamily protein (.1) AT1G51300 120 / 3e-33 alpha/beta-Hydrolases superfamily protein (.1) AT1G52470 115 / 2e-31 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G52460 114 / 1e-30 alpha/beta-Hydrolases superfamily protein (.1) AT1G47780 91 / 4e-23 alpha/beta-Hydrolases superfamily protein (.1) AT1G52440 85 / 5e-20 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043294 [exp] 488 / 8e-177 AT5G20060 385 / 3e-136 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10008078 [exp] 362 / 7e-128 AT5G20060 362 / 4e-128 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10026054 [exp] 305 / 5e-105 AT1G52700 337 / 2e-117 alpha/beta-Hydrolases superfamily protein (.1) Lus10014347 [exp] 299 / 1e-102 AT1G52700 328 / 3e-114 alpha/beta-Hydrolases superfamily protein (.1) Lus10002034 [exp] 182 / 1e-55 AT3G15650 239 / 1e-77 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G070700 [exp] 399 / 2e-142 AT5G20060 398 / 8e-142 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.018G030200 [exp] 380 / 1e-134 AT5G20060 373 / 4e-132 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.006G251100 [exp] 374 / 3e-132 AT5G20060 370 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.001G173700 [exp] 355 / 8e-125 AT3G15650 389 / 7e-138 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G060300 [exp] 352 / 8e-124 AT1G52700 382 / 1e-135 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G023000 [exp] 85 / 3e-19 AT4G22300 357 / 1e-125 SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1, carboxylesterases (.1) Potri.004G001701 [exp] 41 / 0.0002 AT4G22300 199 / 9e-65 SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1, carboxylesterases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02230 [flax] [poplar] Abhydrolase_2 Phospholipase/Carboxylesterase
Representative CDS sequence Show only first row Show all	>Lus10019438 pacid=23181470 polypeptide=Lus10019438 locus=Lus10019438.g ID=Lus10019438.BGIv1.0 annot-version=v1.0 ATGAGCTTTACTGGTCCTTCAATGGCTTCTGGTAAGAGAGCGTTTGATTTTGGCAAGACATTTGTGGTAAGACCCAAAGGCAAACACCAGGCTACTGTTG TTTGGCTCCATGGCCTTGGTGATAATGGCTCTAGCTGGTCACAGCTCTTGGAGACCCTTCCCCTTCCAAATATCAAATGGATATGTCCAACAGCTCCAAC CCGGCCTATAACTATGTTTGGTGGGTTCCCATCTACTGCATGGTTTGATGTGAGAGAGCTCTCAGAGGATGCTCCAGATGACGTAGAGGGTTTGGATGCT GCAGCAAACCATGTTGCAAACTTATTGGCATCGGAGCCTGCTGATATTAAAATAGCCATTGGAGGGTTTAGTATGGGTGCAGCGACCTCCCTGTACTCTG GGACCTGCTTCACTATGGGAAAGTATGCCGATGGCAATCCATATCCTGCTAATTTGACTGCTGTTGTTGGATTAAGCGGCTGGCTTCCATGCTCAAAGAC TTTGGGTAAACAACTAGCTGGAGTTGATGGGGCAGCTAACCGTGCTACATCTCTGCCTATTTTGCTATGCCATGGAAAAGGTGATGATGTGGTCTCATAC AAATACGGTGAGAAATCGTCTCAGGTTCTGACCTCACTTGGCTTCCAAGATGTAACGTTCAAATCATACAGTGGGCTTGGGCATTACACAATCCCTCAAG AGATGGACGAGCTTTGTGGGTGGCTAACTTCCAAGTTGGGGCTTGGTAGCAGCTCTTCATCAGCCAAGTAA
AA sequence Show only first row Show all	>Lus10019438 pacid=23181470 polypeptide=Lus10019438 locus=Lus10019438.g ID=Lus10019438.BGIv1.0 annot-version=v1.0 MSFTGPSMASGKRAFDFGKTFVVRPKGKHQATVVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPTRPITMFGGFPSTAWFDVRELSEDAPDDVEGLDA AANHVANLLASEPADIKIAIGGFSMGAATSLYSGTCFTMGKYADGNPYPANLTAVVGLSGWLPCSKTLGKQLAGVDGAANRATSLPILLCHGKGDDVVSY KYGEKSSQVLTSLGFQDVTFKSYSGLGHYTIPQEMDELCGWLTSKLGLGSSSSSAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20060			alpha/beta-Hydrolases superfam...		Lus10019438 [exp]	0	1
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10002442 [exp]	1.4	0.9004
AT3G02710			ARM repeat superfamily protein...		Lus10010958 [exp]	2.4	0.8973
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10016579 [exp]	4.7	0.8980
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Lus10015561 [exp]	6.9	0.8628
AT3G59420		ACR4	crinkly4 (.1)		Lus10000764 [exp]	7.5	0.8522
AT4G11980		ATNUDX14, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10006685 [exp]	10.4	0.8393
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10005877 [exp]	10.5	0.8383
AT4G21060			Galactosyltransferase family p...		Lus10036154 [exp]	12.0	0.8302
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10031586 [exp]	12.2	0.8679
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Lus10021303 [exp]	13.0	0.8336

Compare expression of checked genes

Lus10019438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.