Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04870 530 / 0 PRMT10, ATPRMT10 protein arginine methyltransferase 10 (.1.2) AT3G20020 200 / 9e-60 ATPRMT6 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) AT2G19670 162 / 3e-46 ATPRMT1A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1A, protein arginine methyltransferase 1A (.1) AT4G29510 160 / 3e-45 ATPRMT1B, ATPRMT11 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) AT3G06930 152 / 3e-41 ATPRMT4B ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4B, protein arginine methyltransferase 4B (.1.2) AT5G49020 148 / 2e-39 ATPRMT4A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) AT3G12270 137 / 2e-35 ATPRMT3 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043295 [exp] 760 / 0 AT1G04870 553 / 0.0 protein arginine methyltransferase 10 (.1.2) Lus10010162 [exp] 201 / 8e-61 AT3G20020 614 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10017367 [exp] 201 / 4e-60 AT3G20020 636 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10000982 [exp] 160 / 4e-45 AT4G29510 619 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10040546 [exp] 159 / 2e-44 AT4G29510 617 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10034172 [exp] 150 / 2e-40 AT5G49020 743 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Lus10043412 [exp] 150 / 4e-40 AT5G49020 770 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Lus10008577 [exp] 137 / 9e-36 AT4G29510 553 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10008664 [exp] 122 / 4e-30 AT3G12270 610 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G071200 [exp] 571 / 0 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2) Potri.007G000300 [exp] 191 / 1e-56 AT3G20020 582 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Potri.006G149400 [exp] 161 / 2e-45 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.018G067200 [exp] 156 / 1e-43 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.010G014600 [exp] 157 / 6e-43 AT5G49020 764 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.008G222700 [exp] 153 / 2e-41 AT5G49020 762 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.001G030200 [exp] 130 / 9e-33 AT3G12270 674 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Potri.014G004000 [exp] 55 / 2e-08 AT3G20020 305 / 9e-104 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05185 [flax] [poplar] PRMT5 PRMT5 arginine-N-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10019439 pacid=23181557 polypeptide=Lus10019439 locus=Lus10019439.g ID=Lus10019439.BGIv1.0 annot-version=v1.0 ATGGGTCCCGTATACCCTCTTAGTACCAAGAATGCCCCTTCTTCAATGGGGAGCAGGCATATCGGCGGAGCTAACGACCGCACTGCCCTCGCCAATGGTG GCGGTGGAGGACTTCCGGCAGTGGACAAGGAGGTTGATTTTGCTCAGTACTTCTGTACATACGCCTTCCTCTACCACCAGAAAGAGATGCTCTCCGATCG GGTTCGGATGGACGCTTACTACAACTCCATATTCCGCAACAAACACCACTTCCATGGAAAAACAGTATTGGATGTTGGAACTGGTAGCGGAATTCTTGCA ATATGGTCTGCACAAGCTGGTGCAAGGAAGGTCTATGCAGTAGAAGCAACTAAGATGTCGGAGCATGCTCGAGCACTCGTTAAGGCAAACAACGTTGGAA ATGTGGTTGAAGTCATCGAGGGTTCTATGGAGGATGTTGTCTTGCCAGAGAAAGTTGATGTAATTATCTCGGAGTGGATGGGTTACTTTCTTCTCCGTGA GTCAATGTTTGACTCTGTTATATGTGCTCGAGACCGCTGGCTGAAACCCGATGGAATGATGTATCCAAGCCATGCTCGCATGTGGTTTGCGCCTATCAGA TCCGGATTAGTAGACAGAAAAGAGAATGACTTGGAAGAAGTAATCGATGATTGGTATAAGTTTGTTGAAGATACGAGGGATTCTTACGGGGTTGATATGG GTGCTTTAACCCAACCTTTCACTGATGAGCAGAGAAAACATTATCTACAGACATCCTTCTGGCAAAACCTTCATCCAAATCAAATTATTGGGTCAGCCAC TATAATCAAAGAGATCGATTGCCTGACTGCCACTGTAAGCGACATAAGTGAGGTCAGGGCGAACTTCTCGTCACTAATCAGCTTGGAGGATACAACGCTC TGTGGATTTGGTGGATGGTTTGATGTTCATTTTCGAGGTAGAATTGATAACCCTGCCAAAGAAGAAATTGAGTTGACAACTGCTCCTAGTAGAGATGGTG GTACTCACTGGGGCCAGCAGGTTTTCCTCACCCACCCTCCTAGTTCTGTGACTGAAGGAGATAATGTGAATGTATCATTCCTAATGTATCGCGCAAAGGA AAACCATAGATTAATGGAGGTAGAGCTTGGATGTCATGTCAGGCAGTCCTCTGGCAAGTTGCTTCCGCCGTTTAGAAGCATATTTCATGTCGAGTGA
AA sequence Show only first row Show all	>Lus10019439 pacid=23181557 polypeptide=Lus10019439 locus=Lus10019439.g ID=Lus10019439.BGIv1.0 annot-version=v1.0 MGPVYPLSTKNAPSSMGSRHIGGANDRTALANGGGGGLPAVDKEVDFAQYFCTYAFLYHQKEMLSDRVRMDAYYNSIFRNKHHFHGKTVLDVGTGSGILA IWSAQAGARKVYAVEATKMSEHARALVKANNVGNVVEVIEGSMEDVVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPDGMMYPSHARMWFAPIR SGLVDRKENDLEEVIDDWYKFVEDTRDSYGVDMGALTQPFTDEQRKHYLQTSFWQNLHPNQIIGSATIIKEIDCLTATVSDISEVRANFSSLISLEDTTL CGFGGWFDVHFRGRIDNPAKEEIELTTAPSRDGGTHWGQQVFLTHPPSSVTEGDNVNVSFLMYRAKENHRLMEVELGCHVRQSSGKLLPPFRSIFHVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04870		PRMT10, ATPRMT1...	protein arginine methyltransfe...		Lus10019439 [exp]	0	1
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10019321 [exp]	1.4	0.9478
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10013199 [exp]	2.2	0.9604
AT3G15460			Ribosomal RNA processing Brix ...		Lus10002403 [exp]	2.4	0.9378
AT3G59670			unknown protein		Lus10008349 [exp]	3.5	0.9371
AT2G40430			unknown protein		Lus10011462 [exp]	7.1	0.9185
AT4G24790			AAA-type ATPase family protein...		Lus10033035 [exp]	8.1	0.9217
AT1G63100	GRAS		GRAS family transcription fact...		Lus10006322 [exp]	8.4	0.9358
AT1G10780			F-box/RNI-like superfamily pro...		Lus10001614 [exp]	9.2	0.9332
AT5G05510			Mad3/BUB1 homology region 1 (....		Lus10040947 [exp]	10.2	0.9309
AT5G26230		MAKR1	membrane-associated kinase reg...		Lus10041214 [exp]	11.0	0.8915

Compare expression of checked genes

Lus10019439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.