Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55190 406 / 3e-146 RAN3, ATRAN3 RAN GTPase 3 (.1) AT5G20010 400 / 6e-144 ATRAN1, RAN-1 ARABIDOPSIS THALIANA RAS-RELATED NUCLEAR PROTEIN, RAS-related nuclear protein-1 (.1) AT5G20020 390 / 1e-139 RAN2 RAS-related GTP-binding nuclear protein 2 (.1) AT5G55080 293 / 2e-101 ATRAN4 ras-related nuclear protein 4 (.1) AT4G39890 102 / 1e-26 AtRABH1c RAB GTPase homolog H1C (.1) AT1G07410 99 / 3e-25 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) AT1G22740 98 / 3e-25 RAB75, RAB7, AtRABG3b RAB GTPase homolog G3B (.1) AT2G44610 97 / 8e-25 RAB6, AtRABH1b, AtRab6A Ras-related small GTP-binding family protein (.1) AT4G19640 97 / 9e-25 ATRAB-F2B, ARA7, Ara-7, AtRABF2b, AtRab5B ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) AT5G45750 97 / 1e-24 AtRABA1c RAB GTPase homolog A1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019420 [exp] 425 / 1e-151 AT5G55190 443 / 8e-159 RAN GTPase 3 (.1) Lus10043297 [exp] 409 / 3e-147 AT5G55190 430 / 1e-155 RAN GTPase 3 (.1) Lus10043276 [exp] 409 / 4e-145 AT5G55190 428 / 9e-153 RAN GTPase 3 (.1) Lus10004687 [exp] 98 / 6e-25 AT1G07410 363 / 2e-129 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Lus10040255 [exp] 98 / 6e-25 AT1G07410 363 / 2e-129 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Lus10001026 [exp] 97 / 2e-24 AT1G07410 366 / 2e-130 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Lus10002178 [exp] 97 / 2e-24 AT5G60860 423 / 4e-153 RAB GTPase homolog A1F (.1) Lus10005443 [exp] 97 / 2e-24 AT3G46060 394 / 2e-141 RAB GTPase homolog 8A (.1.2.3) Lus10017679 [exp] 97 / 2e-24 AT5G60860 426 / 4e-154 RAB GTPase homolog A1F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G250300 [exp] 407 / 2e-146 AT5G55190 424 / 4e-153 RAN GTPase 3 (.1) Potri.018G030900 [exp] 404 / 2e-145 AT5G55190 424 / 3e-153 RAN GTPase 3 (.1) Potri.018G030700 [exp] 404 / 2e-145 AT5G55190 424 / 3e-153 RAN GTPase 3 (.1) Potri.006G250400 [exp] 391 / 3e-140 AT5G55190 411 / 3e-148 RAN GTPase 3 (.1) Potri.001G152800 [exp] 100 / 9e-26 AT1G02130 382 / 2e-137 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.003G086700 [exp] 100 / 9e-26 AT2G44610 397 / 4e-143 Ras-related small GTP-binding family protein (.1) Potri.002G135500 [exp] 99 / 2e-25 AT2G44610 385 / 3e-138 Ras-related small GTP-binding family protein (.1) Potri.001G080400 [exp] 98 / 4e-25 AT1G02130 387 / 2e-139 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.018G079300 [exp] 98 / 4e-25 AT5G45130 273 / 2e-94 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.003G081800 [exp] 97 / 6e-25 AT1G02130 391 / 9e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10019441 pacid=23181571 polypeptide=Lus10019441 locus=Lus10019441.g ID=Lus10019441.BGIv1.0 annot-version=v1.0 ATGGCTCTCCCGAATCAGCAAGTAGTTGACTACCCGAGCTTCAAGCTCGTTATTGTTGGCGATGGAGGCACCGGGAAAACCACCTTCGTCAAGAGACATT TGACTGGAGAGTTTGAGAAGAAATATGAACCAACCATTGGCGTGGAAGTCCATCCATTGGATTTCACTACCAACTGTGGAAAGATCCGATTCTATTGCTG GGACACAGCTGGACAAGAGAAATTTGGCGGACTCAGGGATGGATACTACATCCATGGTCAATGTGCGATTATAATGTTTGATGTCACCGCAAGATTGACC TACAAGAATGTTCCTACATGGCATCGTGATCTCTGCAGGGTTTGTGAGAATATACCCATTGTTCTCTGTGGAAACAAGGTTGATGTAAAGAACAGGCAGG TTAAGGCCGATGTGAAGAACAGGCAGGTTAAGGCCAAGCAGGTTACTTTCCACAGGAAGAAGAATCTCCAGTACTATGAGATATCTGCCAAGAGCAACTA CAACTTTGAGAAGCCTTTCCTCTACCTTGCTCGCAAGCTTGCTGGGGACCCCAATCTTCACTTTGTGGAGGCGGTTGCCCTCCGTCCTCCAGAGGTTCAA ATTGACATGGCTACACAGCAACAACATGAACAAGAGCTTGCTCAAGCTGCTAACCAGCCTCTTCCTGATGACGATGATGATGCATTCGAGTAA
AA sequence Show only first row Show all	>Lus10019441 pacid=23181571 polypeptide=Lus10019441 locus=Lus10019441.g ID=Lus10019441.BGIv1.0 annot-version=v1.0 MALPNQQVVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFTTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKADVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVEAVALRPPEVQ IDMATQQQHEQELAQAANQPLPDDDDDAFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10019441 [exp]	0	1
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10043297 [exp]	1.0	0.9332
AT5G18390			Pentatricopeptide repeat (PPR)...		Lus10032787 [exp]	3.9	0.8535
AT1G51370			F-box/RNI-like/FBD-like domain...		Lus10027020 [exp]	6.0	0.8649
AT5G08200			peptidoglycan-binding LysM dom...		Lus10017399 [exp]	6.2	0.8885
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10004469 [exp]	6.3	0.8749
AT5G08060			unknown protein		Lus10040513 [exp]	6.9	0.8792
AT4G02730		AtWDR5b	human WDR5 \(WD40 repeat\) hom...		Lus10014674 [exp]	6.9	0.8690
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10015832 [exp]	7.0	0.8684
AT4G01200			Calcium-dependent lipid-bindin...		Lus10008731 [exp]	8.1	0.8424
AT1G70280			NHL domain-containing protein ...		Lus10012989 [exp]	8.5	0.8465

Compare expression of checked genes

Lus10019441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.