Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26650 1187 / 0 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT2G25600 1007 / 0 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G32500 1001 / 0 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT4G22200 558 / 0 AKT3, AKT2/3 potassium transport 2/3 (.1) AT5G46240 554 / 0 KAT1 potassium channel in Arabidopsis thaliana 1 (.1) AT4G18290 539 / 0 KAT2 potassium channel in Arabidopsis thaliana 2 (.1) AT4G32650 425 / 1e-138 AtLKT1, KAT3, ATKC1 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) AT5G37500 375 / 9e-117 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT3G02850 371 / 4e-115 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT2G03430 69 / 7e-13 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043298 [exp] 1658 / 0 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10033052 [exp] 1441 / 0 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10002529 [exp] 983 / 0 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10013115 [exp] 966 / 0 AT2G25600 1036 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10008082 [exp] 947 / 0 AT2G25600 994 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10017766 [exp] 785 / 0 AT2G26650 719 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10042831 [exp] 582 / 0 AT5G46240 825 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Lus10019944 [exp] 575 / 0 AT4G22200 1111 / 0.0 potassium transport 2/3 (.1) Lus10028128 [exp] 573 / 0 AT5G46240 827 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G071400 [exp] 1266 / 0 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.006G249900 [exp] 1081 / 0 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.018G031600 [exp] 1068 / 0 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.006G154600 [exp] 890 / 0 AT2G26650 816 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.003G018800 [exp] 583 / 0 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1) Potri.004G132200 [exp] 579 / 0 AT5G46240 913 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Potri.018G035500 [exp] 470 / 2e-155 AT4G32650 777 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.006G245000 [exp] 469 / 4e-155 AT4G32650 752 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.012G124944 [exp] 455 / 5e-150 AT4G32650 734 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.017G135400 [exp] 366 / 3e-113 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein CL0030 [flax] [poplar] PF11834 [flax] [poplar] KHA KHA, dimerisation domain of potassium ion channel CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10019442 pacid=23181509 polypeptide=Lus10019442 locus=Lus10019442.g ID=Lus10019442.BGIv1.0 annot-version=v1.0 ATGGAGAATCTGCTAGGTATAAGGATGTTCAACGTCTCTGTTTGTGGGCAAGATGAGCTGGAGCACATATCGAGGGACGGAAGCCAGTACAGTCTCTCAA CTGGGATACTGCCATCTCTTGGTGCAAGAAGTAATCGGAGGGTCAGGCTACGCAAGTTCATTATCTCTCCTTACGATCGCCATTACAGGATATGGGAGAC ATTCCTCATTGTCTTGGTCCTTTACACAGCTTGGGCATCTCCTTTTGAATTCGGCTTTCTTAGAAAGCCAGAGAGGCCACTCTCAATTGTCGATAACATT GTCAATGCATTCTTTGCCATGGATATCATTCTTACATTCTTTGTGGCTTACCTTGACAAATCTACCTACCTTCTTATGGACAATCGGAAAAAGATTGCTT GGAAGTATACAAGAACTTGGCTGGTCTTTGATGTCATTTCCATCATCCCGTCCGAGCTCGCTTGGAAAATCTCTCCTAAGCCATTCCGGTCATATGGCTT GTTTAACATGCTTCGTCTGTGGCGTCTTAGAAGAGTTAGTTCTCTCTTTTCCAGGTTGGAAAAAGACAGAAACTACAACTACTTCTGGGTCCGATGTGCC AAACTCATCTGTGTCACCCTTTTCGCTGTCCATTGTGCTGGATGCTTCTATTATCTTATTGCTGCTCGCTATCACAATCCTGAAAGAACTTGGATTGGAG CTTCGCTTGGGAATGATTTTCATGAAAAAGGAATATGGATTCGATATGTGACTTCAATGTACTGGTCTATTACTACTCTGACAACTGTTGGCTATGGAGA TTTGCATCCTGTGAACACAAGAGAAATGTTATTTGATATCTTTTATATGCTCTTTAACCTTGGATTGACTGCATACTTGATTGGTAACATGACCAACTTG GTTGTTCATGGTACCAGTCGAACGAGAAGATTTAGAGATACCATTCAAGCTGCTTCCAGCTTTTCTCAGAGGAACCAGTTGCCGGTCAGGTTGCAAGATC AGATGCTTGCACATTTGTGTTTGAGATTCAGGACAGATTCAGAGGGACTGCAGCAGCAGGAGACTCTTGATTCCCTCCCGAAAGCCATTCGCTCGAGCAT TTCCCATTACCTGTTCTACTCTCTCGTCGACAAAGTTTACTTGTTTCGTGGGGTGTCTAACGACTTGCTTTTCCAGTTGGTCTCGGAGATGAAAGCTGAG TATTTCCCTCCCAAAGAAGATGTGATTTTGCAGAATGAAGCCCCAACAGACTTCTATATCCTCGTCACTGGTTCCGTCGTGGTTGGGGAGCTAAAAACGG GTGATGTTTGTGGTGAGATTGGAGTTCTTTGCTACAAACCACAACTGTTTACTGTGAGGACCAAAAGACTGTGCCAGCTACTTCGAATGAACCGAACTAC ATTCTTGAATATTGTTCAAGCCAATGTTGGAGACGGGACAATTATTATGAACAATCTTCTTCAGCATTTGAAAGATCTCAAGGATCCAATAATGGAGGGA GTTCTGCTGGAAACAGAGAACATGCTGGCTCATGGAAGAATGGACATTCCTCTTAGTCTATGCTTTGCTGCAATGAGAGGAGATGATCTTTTGTTGCATC AGCTACTAAAACGCGGTCTAGATCCAAACGAGTCCGACAATAATGGCAGAGCAGCTCTGCACATTGCCGCATCTGGAGGAAGTGAGAACTGTGTGCTTCT TCTGCTGGACTATGGGGCTGATCCTAACTGTAGAGACTCAGATGGCAATGTTCCATTATGGGAGGCAATGAAAGCTGGCCATACAGGAGTGGTGAAGTTG TTGTTAGAAAATGGCGCCTCCATACTATCCGGAGACGTCGGTCATTTCGCCTGCACTGCTGCCGAGGAGAATAACCTCGACTTGCTCAAGGAAATCGCAC GCCATGGGGGAGACATCAAGTGCCCCAAGAGCAACGGTAGCACAGCACTGCACGTTGCTGTCTGCGAGGATAACCCCGAGATCATCAGGTACCTTCTTGA CCAAGGTGCTGACATGGACAAACCAGATGTCAATGGTTGGACTGCAAGGGAGTTGGCTGATCAACAAGGACATGAGGAGATACAGTTCATGTTTAAGAAA TGTAAAGAGCGACCGAAACCTCAATCCATTGTGTCGGTTCCCGAGAAGCAAGAGAACCGAGTTAGGTACCTCGGAAGGTTCTCAAGCGAGCCAACCATCC ATCCGGTGTCTGCCGAAGATGGAGGATCGTTGGGGCGCCACAGTCGGCCAAGGCGTAAGACTAACAATTTCCACAACTCGCTTTTCGGAATGATGTCGGC TGCACAGAATGGGGATACTAATAACAATGCAGGAGTTATGTTTCCTGCCAATAGCAATAATACAAGCCAGGGGAATAGTACAGGAGCAGCTAGAGTGATT ATAAATTGCCCTGCAAAGGGAGATGATACCAAGAAGCTTGTGCTGCTTCCTAAGAGCTTCCAGGAGTTACTTGATTTGGGGGCAAAGAAATATGGGATAA AAGTTGGTAAAGTAGTGATGAAAAACAGAGTTGAAGTTGATGATATTGAAGTGGTTAGAGATGGTGATGAACTAATATTTATTAGTGATGGAACACCTGA GACTACTAATACTGCTACCACAAATACAGATGAGCTGATTCAGTAA
AA sequence Show only first row Show all	>Lus10019442 pacid=23181509 polypeptide=Lus10019442 locus=Lus10019442.g ID=Lus10019442.BGIv1.0 annot-version=v1.0 MENLLGIRMFNVSVCGQDELEHISRDGSQYSLSTGILPSLGARSNRRVRLRKFIISPYDRHYRIWETFLIVLVLYTAWASPFEFGFLRKPERPLSIVDNI VNAFFAMDIILTFFVAYLDKSTYLLMDNRKKIAWKYTRTWLVFDVISIIPSELAWKISPKPFRSYGLFNMLRLWRLRRVSSLFSRLEKDRNYNYFWVRCA KLICVTLFAVHCAGCFYYLIAARYHNPERTWIGASLGNDFHEKGIWIRYVTSMYWSITTLTTVGYGDLHPVNTREMLFDIFYMLFNLGLTAYLIGNMTNL VVHGTSRTRRFRDTIQAASSFSQRNQLPVRLQDQMLAHLCLRFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLVDKVYLFRGVSNDLLFQLVSEMKAE YFPPKEDVILQNEAPTDFYILVTGSVVVGELKTGDVCGEIGVLCYKPQLFTVRTKRLCQLLRMNRTTFLNIVQANVGDGTIIMNNLLQHLKDLKDPIMEG VLLETENMLAHGRMDIPLSLCFAAMRGDDLLLHQLLKRGLDPNESDNNGRAALHIAASGGSENCVLLLLDYGADPNCRDSDGNVPLWEAMKAGHTGVVKL LLENGASILSGDVGHFACTAAEENNLDLLKEIARHGGDIKCPKSNGSTALHVAVCEDNPEIIRYLLDQGADMDKPDVNGWTARELADQQGHEEIQFMFKK CKERPKPQSIVSVPEKQENRVRYLGRFSSEPTIHPVSAEDGGSLGRHSRPRRKTNNFHNSLFGMMSAAQNGDTNNNAGVMFPANSNNTSQGNSTGAARVI INCPAKGDDTKKLVLLPKSFQELLDLGAKKYGIKVGKVVMKNRVEVDDIEVVRDGDELIFISDGTPETTNTATTNTDELIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10019442 [exp]	0	1
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026328 [exp]	2.4	0.7997
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026329 [exp]	9.5	0.7792
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Lus10028115 [exp]	10.0	0.8350
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10037150 [exp]	16.9	0.7116
AT3G48120			unknown protein		Lus10042150 [exp]	20.2	0.7047
AT5G45800		MEE62	maternal effect embryo arrest ...		Lus10007287 [exp]	26.3	0.7216
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10013851 [exp]	36.0	0.7029
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10018735 [exp]	43.3	0.7110
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10009055 [exp]	44.7	0.6825
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10040311 [exp]	44.8	0.7691

Compare expression of checked genes

Lus10019442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.