Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18660 64 / 1e-13 AtPNP-A, PNP-A, EXLB3 plant natriuretic peptide A (.1) AT4G30380 52 / 4e-09 EXLB2 Barwin-related endoglucanase (.1) AT1G65680 40 / 0.0002 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033054 [exp] 168 / 1e-54 AT2G18660 56 / 1e-10 plant natriuretic peptide A (.1) Lus10013118 [exp] 150 / 1e-47 AT4G30380 67 / 5e-15 Barwin-related endoglucanase (.1) Lus10017763 [exp] 110 / 2e-32 ND 35 / 0.001 Lus10030078 [exp] 92 / 4e-24 AT2G18660 84 / 3e-21 plant natriuretic peptide A (.1) Lus10042435 [exp] 68 / 4e-15 AT4G30380 101 / 2e-28 Barwin-related endoglucanase (.1) Lus10019978 [exp] 57 / 7e-11 AT4G30380 162 / 8e-53 Barwin-related endoglucanase (.1) Lus10026232 [exp] 56 / 2e-10 AT4G30380 90 / 2e-23 Barwin-related endoglucanase (.1) Lus10020130 [exp] 54 / 2e-09 AT2G18660 70 / 2e-15 plant natriuretic peptide A (.1) Lus10026930 [exp] 54 / 2e-09 AT2G18660 69 / 6e-15 plant natriuretic peptide A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G155000 [exp] 153 / 1e-48 AT2G18660 59 / 1e-11 plant natriuretic peptide A (.1) Potri.018G031901 [exp] 149 / 5e-47 AT4G30380 57 / 3e-11 Barwin-related endoglucanase (.1) Potri.006G249500 [exp] 145 / 2e-45 AT4G30380 61 / 1e-12 Barwin-related endoglucanase (.1) Potri.018G029100 [exp] 101 / 3e-28 AT2G18660 94 / 2e-25 plant natriuretic peptide A (.1) Potri.006G252200 [exp] 100 / 4e-28 AT2G18660 91 / 2e-24 plant natriuretic peptide A (.1) Potri.003G218300 [exp] 67 / 6e-15 AT4G30380 86 / 2e-22 Barwin-related endoglucanase (.1) Potri.018G098200 [exp] 65 / 2e-14 AT4G30380 122 / 5e-37 Barwin-related endoglucanase (.1) Potri.018G101600 [exp] 53 / 1e-09 AT2G18660 113 / 3e-33 plant natriuretic peptide A (.1) Potri.006G176300 [exp] 53 / 1e-09 AT4G30380 165 / 6e-54 Barwin-related endoglucanase (.1) Potri.006G179300 [exp] 53 / 1e-09 AT2G18660 116 / 1e-34 plant natriuretic peptide A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10019444 pacid=23181517 polypeptide=Lus10019444 locus=Lus10019444.g ID=Lus10019444.BGIv1.0 annot-version=v1.0 ATGTCGAGGCTTCTCCTTCTCTCCATCTCCTTCCTCTTCACCATTCTGCATCTCCCTTTCTCCTCCCTCGCCGATATCGGCACCGCCGCCTGGTACGCTC CTCCTTATTCCCCGACGGCGTGCTACGGCGGCGACGCCTCCCAGTTCCCGTCTAGCAATCTCTTCGCGGCGGCCGGGGAAGGGATATGGGACAATGGAGC AGGGTGCGGGAGGCAGTACAAGGTTCGGTGTATCAGCGCGGTGGCGACTGGATCCTGTAATCCTAGCCAGACGATTCAGGTGAGGATCGTTGACCACGCG TCATCCTTGGTCTCTGCGCCTTCGGCCGGCGGAACCACCATCGTCCTGTCCCAGACGGCGTTCGGAACAGTCGCGAATTGGACCGCTAGCAACAACATCA ACATTGAGATCGAAAAGTAA
AA sequence Show only first row Show all	>Lus10019444 pacid=23181517 polypeptide=Lus10019444 locus=Lus10019444.g ID=Lus10019444.BGIv1.0 annot-version=v1.0 MSRLLLLSISFLFTILHLPFSSLADIGTAAWYAPPYSPTACYGGDASQFPSSNLFAAAGEGIWDNGAGCGRQYKVRCISAVATGSCNPSQTIQVRIVDHA SSLVSAPSAGGTTIVLSQTAFGTVANWTASNNINIEIEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10019444 [exp]	0	1
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10028445 [exp]	2.0	0.8023
AT3G53810			Concanavalin A-like lectin pro...		Lus10001562 [exp]	3.5	0.7427
AT2G37570		SLT1	sodium- and lithium-tolerant 1...		Lus10024406 [exp]	6.7	0.7937
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10029373 [exp]	6.8	0.7981
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10008598 [exp]	8.1	0.7487
AT1G69510			cAMP-regulated phosphoprotein ...		Lus10030448 [exp]	9.5	0.7791
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10029208 [exp]	10.0	0.7247
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10024861 [exp]	13.0	0.7122
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026329 [exp]	14.1	0.7626
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026328 [exp]	16.0	0.7316

Compare expression of checked genes

Lus10019444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.