Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20140 417 / 3e-146 SOUL heme-binding family protein (.1.2) AT2G37970 59 / 4e-10 SOUL-1 SOUL heme-binding family protein (.1) AT3G10130 56 / 1e-08 SOUL heme-binding family protein (.1) AT2G46100 41 / 0.0005 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013345 [exp] 486 / 4e-173 AT5G20140 464 / 8e-164 SOUL heme-binding family protein (.1.2) Lus10001847 [exp] 361 / 6e-124 AT5G20140 330 / 3e-111 SOUL heme-binding family protein (.1.2) Lus10035075 [exp] 68 / 6e-14 AT5G20140 50 / 4e-08 SOUL heme-binding family protein (.1.2) Lus10022712 [exp] 71 / 1e-13 AT3G10130 366 / 1e-127 SOUL heme-binding family protein (.1) Lus10040682 [exp] 65 / 3e-13 AT5G20140 67 / 1e-14 SOUL heme-binding family protein (.1.2) Lus10017193 [exp] 64 / 6e-12 AT2G37970 273 / 4e-94 SOUL heme-binding family protein (.1) Lus10011992 [exp] 50 / 9e-08 ND 40 / 7e-05 Lus10027752 [exp] 50 / 3e-07 AT2G37970 275 / 2e-94 SOUL heme-binding family protein (.1) Lus10000227 [exp] 49 / 2e-06 AT2G37970 222 / 1e-73 SOUL heme-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G073501 [exp] 451 / 2e-159 AT5G20140 528 / 0.0 SOUL heme-binding family protein (.1.2) Potri.016G098500 [exp] 73 / 2e-14 AT3G10130 295 / 7e-100 SOUL heme-binding family protein (.1) Potri.016G109400 [exp] 62 / 3e-11 AT2G37970 260 / 1e-88 SOUL heme-binding family protein (.1) Potri.002G162800 [exp] 42 / 0.0004 AT2G46100 286 / 5e-98 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [flax] [poplar] SHS2 PF04832 [flax] [poplar] SOUL SOUL heme-binding protein CL0051 [flax] [poplar] NTF2 PF10184 [flax] [poplar] DUF2358 Uncharacterized conserved protein (DUF2358)
Representative CDS sequence Show only first row Show all	>Lus10019445 pacid=23181487 polypeptide=Lus10019445 locus=Lus10019445.g ID=Lus10019445.BGIv1.0 annot-version=v1.0 ATGAACCAATCAGAGGAGGATAAGCACTCTTCCGATTCAGATTCGAGCAAGGACGACGATGTCCACGTCGACGTTGAAAAGCTGGTCGATTTCCTTTCCA ACGATCTTCCTCATCTCTTTGATGAGCAAGGGATCGATCGGAAAGCTTACGATGATCAGATTCAGTTCTGCGACCCAATTACTCGCAACTATGACCTTGA TGGGTATCTATTGAACATCGCTGCTCTCAAGACCCTGTTCCGCCCCAAGTTTCAGCTGCATTGGACAGGACCATACGAGATAACAACGAGGTGGACAATG GTGATGCGGTTCGTGCTTCTTCCATGGAGGCCTGAGATGGTGTTTACAGGTACTACTGTTATGGGCGTTAATCCTAAGACGGGCAAGTTTTGCAGCCATG TGGATTTCTGGGATTCTGTTTCCAATAGCAGTTTCTTTTCGCCTGAAGGTCTATGGGATGTGATTCAACAATTGAGGATTTACAAGACTCCTAACAAGGA CACGCCCAAGTATGAGGTATTGAAGCGGACAGCGGTGTATGAGGTAAGGAAGTATGATCCTTATATGGTGGTAGAAACACAGGGTGACCATTTAGCAGGC ATATCTGGTTACAGCTCTGTTACTGGGTACATCTTCGGGAATAATACAAAGACAGAAGTTATACCAACGACTACTCCTATATTCACAGAGGCAAAGGATT CTGAGCTGACCAAAGTAGTTATCCAAGTAGTTCTTCCCTTGAACAAAGACTTCAGCAACTTACCGGATCCAATTGAGGATGCCGTCGGATTGAAAAAGAT TAGAGGAGGCACAGCAGTCGTGCACAAGTTCAGTGGGAGTCCGACTGAGGAAATTACCCGCGAGAAAGAGAAACTACTTCGGTCATGTGCCATCAGGGAT AGTCTCCAGCCGAAACTAGGATGCATGCTAGCTCGGTATAATGACCCTGGCCAAACGTGGAGCTCCATAATGAGGAATGAAGTACTAATATGGCTGGAGG AATACTCGCTCGACTAA
AA sequence Show only first row Show all	>Lus10019445 pacid=23181487 polypeptide=Lus10019445 locus=Lus10019445.g ID=Lus10019445.BGIv1.0 annot-version=v1.0 MNQSEEDKHSSDSDSSKDDDVHVDVEKLVDFLSNDLPHLFDEQGIDRKAYDDQIQFCDPITRNYDLDGYLLNIAALKTLFRPKFQLHWTGPYEITTRWTM VMRFVLLPWRPEMVFTGTTVMGVNPKTGKFCSHVDFWDSVSNSSFFSPEGLWDVIQQLRIYKTPNKDTPKYEVLKRTAVYEVRKYDPYMVVETQGDHLAG ISGYSSVTGYIFGNNTKTEVIPTTTPIFTEAKDSELTKVVIQVVLPLNKDFSNLPDPIEDAVGLKKIRGGTAVVHKFSGSPTEEITREKEKLLRSCAIRD SLQPKLGCMLARYNDPGQTWSSIMRNEVLIWLEEYSLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20140			SOUL heme-binding family prote...		Lus10019445 [exp]	0	1
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10024705 [exp]	6.6	0.6456
AT1G24420			HXXXD-type acyl-transferase fa...		Lus10025521 [exp]	24.4	0.6198
AT1G08580			unknown protein		Lus10000388 [exp]	40.8	0.5886
AT4G37700			unknown protein		Lus10025207 [exp]	56.9	0.5992
AT3G20580		COBL10	COBRA-like protein 10 precurso...		Lus10043065 [exp]	131.9	0.5235
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10026073 [exp]	159.8	0.5685
AT1G05170			Galactosyltransferase family p...		Lus10006782 [exp]	164.6	0.5335

Compare expression of checked genes

Lus10019445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.