Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26640 462 / 2e-160 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT1G04220 436 / 8e-150 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT5G43760 436 / 9e-150 KCS20 3-ketoacyl-CoA synthase 20 (.1) AT1G01120 391 / 3e-132 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT1G19440 377 / 6e-127 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT2G16280 376 / 8e-127 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT1G68530 368 / 9e-124 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT4G34510 365 / 1e-122 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT1G25450 363 / 6e-122 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT3G10280 348 / 9e-117 KCS14 3-ketoacyl-CoA synthase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019446 [exp] 524 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10043300 [exp] 522 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10039401 [exp] 468 / 6e-164 AT1G04220 644 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10006637 [exp] 457 / 5e-158 AT1G04220 819 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10041177 [exp] 447 / 3e-154 AT1G04220 782 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10039399 [exp] 423 / 4e-145 AT1G04220 689 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10006636 [exp] 414 / 7e-142 AT1G04220 618 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10002691 [exp] 407 / 8e-139 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10010108 [exp] 405 / 6e-138 AT1G01120 868 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G249200 [exp] 476 / 5e-166 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.018G032200 [exp] 472 / 2e-164 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079400 [exp] 468 / 2e-162 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079300 [exp] 467 / 4e-162 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.008G160000 [exp] 465 / 2e-161 AT2G26640 821 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080000 [exp] 442 / 6e-155 AT2G26640 573 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080400 [exp] 448 / 7e-155 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079700 [exp] 447 / 2e-154 AT2G26640 756 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079500 [exp] 445 / 1e-153 AT2G26640 758 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080200 [exp] 444 / 3e-153 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10019448 pacid=23181584 polypeptide=Lus10019448 locus=Lus10019448.g ID=Lus10019448.BGIv1.0 annot-version=v1.0 ATGATGGCACAGCCAAAACCTAATACGCCCTTGATTCAACCCACACTACCTTCACCATCAAGGAAACTCCCAGATTTCAAGAATTCCGTGAAGCTGAAAT ACGTGAAGCTGGGATATCATTACCTCATTACTCATGGCATGTACCTCTTCCTTTCCCCGGTTGTAGTTGTGCTTGCAGCTCAGCTTTCGACGTTCTCCAT CAACGATCTCCGAGACTTGTGGGAACATCTCCAATACAATCTTATCTCTGCCTGTTTATCTCGTCAACTTCTCATGTTACAAGGCCGAGGATTCGACAAA ATGCACCAAGAAGATCTTCATGGATCGGTCTTGCATGGCCGGGACGTTCACCGAGGAGAGTCTCGAATTCCAGAGGAAGATTCTCGAACGGTCTGGTTTA GGCGATTCAACGTATTTACCGGATGCCGTGCTGGCTACCCCTCCGAACCCTTCTATGCAAGAGGCGAGGAGAGAAGCCGAGGCTGGAAAGAGCTTCTTCA GGTGCATCCCAATTCGTATGCATTGGTTATAAGCACTGAGAACATCACTTTGAATTGGTATTTCGGGAATGACCGATCGAAGCTCGTTTCGAACTGCCTT TTCCGAATGGGATGCGCTGCAATTCTGCTCTCCAATCGAAGATCGGACAGGAGAAGGTCCAAGTACGAGCTGGTTCACACCGTTCGAACTCACAAAGGTG CCGACGACAAGTGCTTCTCTTGCGTCACCCAAGAAGAGGATCGAAACGGGAAAGTCGGTGTGACTTTGTCGAAGGATCTGATGGCAGTTGCTGGGGATGC TTTGAAGACTAACATCACTACCTTGGGGCCTCTCGTCCTCCCGATGTCGGAACAGCTTATTTTCCTTGCAACATTGGTCGGAAAGAAGGTTTTGAAGATG AAGATCAAGCCGTACATCCCTGATTTCAAGCTGGCCTTTGAGCACTTCTGCATCCATGCCGGTGGGAGAGCTGTATTGGATGAGTTGGAGAAGAACTTGC AGCTTTCTGACTGGCATATGGAGCCGTCTAGAATGACGCTCTACCGATTTGGGAACACTTCGAGCAGTTCTCTGTGGTATGAACTAGCTTATGCGGAAGC GAAAGGGAGGATTAGGAAGGGGGATAGAACATGGCAAATAGCGTTTGGTTCAGGATTCAAGTGTAACAGTGCTGTGTGGAAGGCTTTGAAGACTATTGAC CCTGCCAAAGAGAAGAACCCTTGGATGGATGAAATTCATGAGTTCCCCGTCGCTGTGCCCAAGGTATCAACAATCGTTTAG
AA sequence Show only first row Show all	>Lus10019448 pacid=23181584 polypeptide=Lus10019448 locus=Lus10019448.g ID=Lus10019448.BGIv1.0 annot-version=v1.0 MMAQPKPNTPLIQPTLPSPSRKLPDFKNSVKLKYVKLGYHYLITHGMYLFLSPVVVVLAAQLSTFSINDLRDLWEHLQYNLISACLSRQLLMLQGRGFDK MHQEDLHGSVLHGRDVHRGESRIPEEDSRTVWFRRFNVFTGCRAGYPSEPFYARGEERSRGWKELLQVHPNSYALVISTENITLNWYFGNDRSKLVSNCL FRMGCAAILLSNRRSDRRRSKYELVHTVRTHKGADDKCFSCVTQEEDRNGKVGVTLSKDLMAVAGDALKTNITTLGPLVLPMSEQLIFLATLVGKKVLKM KIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYAEAKGRIRKGDRTWQIAFGSGFKCNSAVWKALKTID PAKEKNPWMDEIHEFPVAVPKVSTIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10019448 [exp]	0	1
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10019446 [exp]	1.0	0.9820
AT1G70420			Protein of unknown function (D...		Lus10029153 [exp]	1.7	0.8892
AT2G39650			Protein of unknown function (D...		Lus10040293 [exp]	2.2	0.8730
AT1G20920			P-loop containing nucleoside t...		Lus10025525 [exp]	4.4	0.8212
AT3G55430			O-Glycosyl hydrolases family 1...		Lus10040294 [exp]	4.5	0.8862
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10026082 [exp]	4.7	0.8908
AT5G10695			unknown protein		Lus10026229 [exp]	5.4	0.8063
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10017141 [exp]	5.9	0.8589
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10021185 [exp]	6.3	0.8527
AT3G60450			Phosphoglycerate mutase family...		Lus10009779 [exp]	7.7	0.8469

Compare expression of checked genes

Lus10019448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.