Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15610 566 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT1G52730 561 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G15470 540 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT2G46290 135 / 1e-36 Transducin/WD40 repeat-like superfamily protein (.1) AT2G46280 122 / 7e-32 TIF3I1, TRIP-1 TGF-beta receptor interacting protein 1 (.1.2.3) AT3G49660 87 / 6e-19 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 79 / 2e-16 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08560 72 / 1e-13 transducin family protein / WD-40 repeat family protein (.1.2) AT2G01330 71 / 3e-13 nucleotide binding (.1.2) AT2G43770 69 / 7e-13 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043302 [exp] 615 / 0 AT3G15610 502 / 2e-180 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021857 [exp] 135 / 1e-36 AT2G46290 549 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10010332 [exp] 134 / 3e-36 AT2G46290 550 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 78 / 2e-15 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10014674 [exp] 75 / 9e-15 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 74 / 1e-14 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10001046 [exp] 75 / 2e-14 AT5G08560 713 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10021059 [exp] 74 / 2e-14 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10001411 [exp] 72 / 1e-13 AT5G08560 695 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G059500 [exp] 613 / 0 AT1G52730 573 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G174600 [exp] 609 / 0 AT1G52730 577 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G141400 [exp] 132 / 1e-35 AT2G46290 553 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G100101 [exp] 127 / 1e-33 AT2G46290 553 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002700 [exp] 79 / 7e-16 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G051900 [exp] 74 / 1e-14 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 72 / 3e-14 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 72 / 8e-14 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 72 / 1e-13 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.006G263400 [exp] 71 / 2e-13 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10019450 pacid=23181504 polypeptide=Lus10019450 locus=Lus10019450.g ID=Lus10019450.BGIv1.0 annot-version=v1.0 ATGGAAAAGAAGAAGGTATCGGTTCCATTGGTCTGCCACGGCCATTCCCGCCCTGTTGTGGATCTGTTTTATAGTCCGATTACTCCAGATGGCTTCTTTC TCATCAGTGCCAGCAAGGATTCCAGTCCCATGCTAAGAAATGGAGAAACTGGAGATTGGATTGGAACGTTTGAAGGGCATAAAGGTGCTGTGTGGAGCTC CTGCTTGGATACTAACGCCTTACGTGCTGCATCTGCTTCTGCTGATTTTACTGCGAAAGTTTGGGATGCATTAACGGGAGATGTGCTGCATTCTTTCGAA CACAAGCACATAGTGAGAGCTTGTACATTTTCAGAGGACACACACCTTTTATTAACTGGTGGAATGGAGAAAATCTTGCGCATTTATGATCTCAACCGCC CAGATGCACCTCCAAGAGAAGTTGACAAGTCACCTGGTTCTGTCAGAGCTCTTGCCTGGCTGCATAGTGATCAGACCATTTTGAGTTCATGCACTGACAT GGGGGGTGTAAGATTGTGGGATGTAAGAAGTGGCCAGATTGTGCAGACCCTTGAGACCAAGTCATCTGTGACTAGTGCCGAAGTCAGTCAGGATGGTCGC TATATTACAACTGCCGATGGCTCAACTGTAAAGTTCTGGGATGCAAATCATTTTGGGCTAGTGAAGAGCTACGATATGCCATGCACTGTGGAATCAGCTT CCTTGGAACCCAAGTATGGAAATAAGTTCATTGCTGCGGGAGAAGACATGTGGGTTCACGTATTTGATTTTCACACTGGGGAGGAGATAGCTTGCAACAA GGGTCACCATGGTCCAGTCCACTGCTTGCGCTTTTCACCTGGAGGAGAATCATATGCGTCTGGATCGGAGGACGGAACCATCAGAATATGGCAGACTGGT CCACTAACGAGCGAGGAGAAAGAAGGGCTGGCACCAGCGAATGGAACGGCGGGGAAGGTGAAGGTGAGCGCTGCGGAAGAAGTGTCGAGAAAGATTGAAG GATTTCAGATTAGTGATGAGGGGAAGGCTAAAGAGAAGGATGAGGCAGCAGGGAAAGCGTGA
AA sequence Show only first row Show all	>Lus10019450 pacid=23181504 polypeptide=Lus10019450 locus=Lus10019450.g ID=Lus10019450.BGIv1.0 annot-version=v1.0 MEKKKVSVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSSCLDTNALRAASASADFTAKVWDALTGDVLHSFE HKHIVRACTFSEDTHLLLTGGMEKILRIYDLNRPDAPPREVDKSPGSVRALAWLHSDQTILSSCTDMGGVRLWDVRSGQIVQTLETKSSVTSAEVSQDGR YITTADGSTVKFWDANHFGLVKSYDMPCTVESASLEPKYGNKFIAAGEDMWVHVFDFHTGEEIACNKGHHGPVHCLRFSPGGESYASGSEDGTIRIWQTG PLTSEEKEGLAPANGTAGKVKVSAAEEVSRKIEGFQISDEGKAKEKDEAAGKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15610			Transducin/WD40 repeat-like su...		Lus10019450 [exp]	0	1
AT3G15610			Transducin/WD40 repeat-like su...		Lus10043302 [exp]	1.0	0.9196
AT1G07310			Calcium-dependent lipid-bindin...		Lus10005867 [exp]	2.4	0.8706
AT2G03690			coenzyme Q biosynthesis Coq4 f...		Lus10026673 [exp]	3.7	0.8827
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Lus10035117 [exp]	5.3	0.8591
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10011187 [exp]	11.5	0.8245
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10027778 [exp]	13.4	0.8582
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Lus10015786 [exp]	13.6	0.8273
AT3G08780			unknown protein		Lus10022677 [exp]	13.7	0.8498
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10015944 [exp]	17.2	0.8505
AT5G58290		RPT3	regulatory particle triple-A A...		Lus10037597 [exp]	17.3	0.8504

Compare expression of checked genes

Lus10019450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.