Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19970 293 / 3e-96 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043303 [exp] 462 / 9e-164 AT5G19970 191 / 2e-58 unknown protein Lus10003029 [exp] 54 / 8e-08 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10007855 [exp] 54 / 1e-07 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G071900 [exp] 371 / 2e-126 AT5G19970 283 / 6e-93 unknown protein Potri.014G093200 [exp] 46 / 3e-05 AT3G61590 538 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.002G166500 [exp] 44 / 0.0001 AT3G61590 542 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10019451 pacid=23181620 polypeptide=Lus10019451 locus=Lus10019451.g ID=Lus10019451.BGIv1.0 annot-version=v1.0 ATGGAAAAAACCGATCACCATCATCACAGCCGTCGATCACTATCCTCTCCTTCGCCATCCTCCGCCGTCGGATTCGCCCTCCTACCTTCCGAACTCATCG AAACCATACTCCTCTCCTTAGCCTTACCCGAACTCTTCCGCCTCAGATCCCTCAACAAATCCGTCTCCCGAATCATCTCCGACCGCAACTTCGTCCGCGA ATTCAACTCCCGCTCCACCGCCGCCACCTGGCTTTTCGTCTACAAGAAGCGCTGGCACAAGGACGCCATCCTCCAAGGCTTCACCCGGAGTTCCGATCGG GTCTGGTTCAAAATCGAGATCGGAGACCTCCTCCGTCCCGTCATCTGCCCCGGCGAGAGCCTCTACTTCTTGACGGCCAGCGGGAACGTCTTCCTCTTCG CTTCCAATAGCCGGAAGGAAGTCATCGCCGTCAATCTGGTCGCCAAGACGGCCTCGAAACTCCCGTCCAGCCCGCTAGGTCCACGTGGTACGTCGTCGTG GCGGAGATCCGGTATGAAGCTGGTCTCCGGGCCGTCAGAAGCTCACTTCCGGTTCATGTTCGGGGAATTAGTCGACTCTCGCCCTTTTCTTTTTATCTAC TCTTCAGATTCGGACACGTGGCAGTCACTCGAAGCAGTGGACGGTAGGGATTACGACAAATCAGTCAACGACGATGATCAAATTCAACACATCTTCCTCA ATATATCCAACGGTCCGGAAGAAAACATGGTGATAGCCGTCCGATTAGGGCGGTACTGGGACCAACCGGTGGTCCTACGGCCGAGATACGAATCGAACCA CCGCGGCGTCGTCGTTCGGCGTCGGGCGGTGGGGTTTAGCTGGGGGGACATGACGATTGATGAGGTACACGTGTACGGAGACGGATACACGATGGTGATA AGATCCAAGGGCGGGGAGGGTGCGGCGGGGATAAGGGTGTTGGAGAGCATGGAATTGTGGGAGCTGGACGTGGCCGAGGGGAGGAGATGGAGATGTATTT CGGAAGCTCCGATGAGAATAATGGAGGAAGTAAAGAAGAAGCCGTACAGGGCAATGATGGGGTGTTTGGGATTGGAGGGAGGAAGGGAGGCAGGGAAGAT AAATGGGGTACTAATGTGTAATTTTGAAGGGATGTGGGACCCAGTATGGGTGTGTTTTGATTTGGGGAGAAGGGAATGGCGGTTGGTACACGTGGCTGAT TGCAAAATGAAGGGGCTAAATTTGGCTGGGATTGCATTCTCTTCTGGGCTTACATTGTCCTCAAATCCATAA
AA sequence Show only first row Show all	>Lus10019451 pacid=23181620 polypeptide=Lus10019451 locus=Lus10019451.g ID=Lus10019451.BGIv1.0 annot-version=v1.0 MEKTDHHHHSRRSLSSPSPSSAVGFALLPSELIETILLSLALPELFRLRSLNKSVSRIISDRNFVREFNSRSTAATWLFVYKKRWHKDAILQGFTRSSDR VWFKIEIGDLLRPVICPGESLYFLTASGNVFLFASNSRKEVIAVNLVAKTASKLPSSPLGPRGTSSWRRSGMKLVSGPSEAHFRFMFGELVDSRPFLFIY SSDSDTWQSLEAVDGRDYDKSVNDDDQIQHIFLNISNGPEENMVIAVRLGRYWDQPVVLRPRYESNHRGVVVRRRAVGFSWGDMTIDEVHVYGDGYTMVI RSKGGEGAAGIRVLESMELWELDVAEGRRWRCISEAPMRIMEEVKKKPYRAMMGCLGLEGGREAGKINGVLMCNFEGMWDPVWVCFDLGRREWRLVHVAD CKMKGLNLAGIAFSSGLTLSSNP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19970			unknown protein		Lus10019451 [exp]	0	1
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Lus10011569 [exp]	2.0	0.9485
AT4G21690		ATGA3OX3	ARABIDOPSIS THALIANA GIBBERELL...		Lus10008100 [exp]	2.2	0.9331
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10040217 [exp]	4.2	0.9313
AT3G26170		CYP71B19	"cytochrome P450, family 71, s...		Lus10018261 [exp]	5.2	0.9533
AT1G62560		FMOGS-OX3 ,FMO ...	flavin-monooxygenase glucosino...		Lus10024609 [exp]	5.7	0.9443
AT2G20030			RING/U-box superfamily protein...		Lus10009511 [exp]	5.9	0.9155
AT4G28890			RING/U-box superfamily protein...		Lus10011702 [exp]	6.9	0.9256
AT1G50650			Stigma-specific Stig1 family p...		Lus10006512 [exp]	6.9	0.9205
AT5G22610			F-box/RNI-like/FBD-like domain...		Lus10027019 [exp]	7.4	0.9067
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Lus10028678 [exp]	8.1	0.9166

Compare expression of checked genes

Lus10019451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.