Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26910 2295 / 0 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT1G15520 1700 / 0 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT1G66950 1605 / 0 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT2G36380 1601 / 0 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT3G16340 1589 / 0 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT1G15210 1568 / 0 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT1G59870 1543 / 0 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT2G29940 1444 / 0 ABCG31, PDR3, ATPDR3 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) AT2G37280 1362 / 0 ABCG33, PDR5, ATPDR5 ATP-binding cassette G33, pleiotropic drug resistance 5 (.1) AT3G53480 1354 / 0 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008090 [exp] 1719 / 0 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041668 [exp] 1692 / 0 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024061 [exp] 1685 / 0 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024060 [exp] 1674 / 0 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10034020 [exp] 1603 / 0 AT1G15520 2029 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041683 [exp] 1585 / 0 AT1G15520 2019 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10025824 [exp] 1570 / 0 AT1G59870 2220 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) Lus10014150 [exp] 1556 / 0 AT3G16340 2221 / 0.0 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) Lus10037562 [exp] 1541 / 0 AT1G59870 2178 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G074500 [exp] 2450 / 0 AT2G26910 2293 / 0.0 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) Potri.018G032900 [exp] 1795 / 0 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G248500 [exp] 1787 / 0 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048700 [exp] 1728 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G179000 [exp] 1727 / 0 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G178900 [exp] 1714 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 1711 / 0 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048900 [exp] 1694 / 0 AT1G15520 2055 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G175700 [exp] 1692 / 0 AT1G15520 2058 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G183200 [exp] 1671 / 0 AT1G15520 2031 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0181 [flax] [poplar] PF08370 [flax] [poplar] PDR_assoc Plant PDR ABC transporter associated CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10019453 pacid=23181576 polypeptide=Lus10019453 locus=Lus10019453.g ID=Lus10019453.BGIv1.0 annot-version=v1.0 ATGTGGAGCTCGGCGGAGAACGTGTTTGGTCGCTCATCGTCGTTCCGGGACGCCGGGGAGGACGAGGAGGCCCTCCGCTGGGCGGCGCTGGAACGTCTGC CGACTTATGCGCGGGTACGAAGAGGCATTTTCAGAAACGTCGTCGGGGATCACAGGGAGATTGATTTGAGCGAGCTCGTCGTCGAGGAGCAGAGGCTGGT TATCGATCGGCTTGTTACTGCTGTGGATGATGATCCCGAGCTGTTCTTCGACCGGATGCGAAAGCGATTCGACGCGGTCGAGTTAGAATTCCCAAAAATT GAGGTGCGGTTTCAGAATTTGAAGGTTGAATCATTTGTACATGTTGGAAGTAGGGCTCTTCCCACCATCCCCAACTTCCTTTTCAATATGAGCGAGGCAT TGCTGAGGACGCTGGGAATCTATAGAGGAAACAGAACCAAGTTAACGATTCTAGACGATCTTAGTGGGATCATTAGGCCGTCAAGAATGACGCTTCTGGT CGGACCTCCTAGCTCTGGCAAGACGACTCTGCTCTTGGCTCTAGCTGGCCGCCTTGGAAATGATTTGCAGATGTCTGGAAAAATTACGTACAATGGACAT GGTCTGGCCGAGTTCGTTGCTCCAAGGACATCAGCTTATGTCAGTCAACACGACAGCCATATTGCAGAGATGACTGTCAGGGAAACGTTAGAATTAGCAG GACGGTGTCAAGGTGTTGGTTCAAAATATGATATGCTTATGGAACTTGCAAGGAGAGAAAAGATGGCAGGGATAAAACCAGATGAAGATCTCGATATATT CATGAAGTCGTTAGCTTTGGGGGGACAGGAAACAAACCTTGTGGTGGAGTATATCATGAAGGTATTCTGGTTGGATGTATGCGCGGACACCTTAGTTGGT GATGAAATGATTAAGGGAATCTCCGGGGGTCAGAAGAAGCGGCTCACAACAGGAGAGCTACTTGTTGGCCCGGCAAGAGTACTTTTCATGGATGAAATCT CGAATGGGCTAGACAGTGCGACCACCTATCAAATCATCAAGTACCTAAGGCATTCAACACATGCACTTGATGGAACTACCATGATTACCTTGCTGCAGCC GGCTCCTGAGACATTTGAGCTTTTCGATGATGTCATACTTTTATCAGAAGGTCAGATTGTGTACCAGGGACCCCGTGAATCCGTCCTTGACTTTTTCTCA TCTGTTGGATTTAGCTGTCCTGAAAGAAAGAATGTTGCCGACTTCTTGCAAGAAGTCACGTCGAAAAAGGATCAGCAGCAATACTGGTCTGATCCTTACC GTCCCTACCGATATATTTCTCCTAGGAAGTTCGTTGAGGCTTTTCGTTCATTCCAAACGGGTAAACAATTGCAAAGAGAGCTAGAAGTTCCTTTCGATAA ACGATACAATCATCCAGCGGCACTGTCGACTTCTCCATACGGGGTCAGGAAAAGTGAAGTTTTCAGGACATGCTATAACTGGCAGAGGCTTCTAATCAAA AGGAACTCATTTATCTATGTATTTAAATTTATTCAGCTCTTTATCGTCGCTTTGATCACAATGAGTGTATTCTTCCGGACAACAATGCATCACAGTTCAG TTTATGATGGAGGCTTGTACCTAGGATCTATATACTTCTCCATGGTCATTATCCTTTTCAATGGTTTTACGGAGGTGTCAATGCTCGTGGCCAAGCTGCC CGTGCTTTACAAACACAGAGACCTGCATTTCTACCCGAGTTGGGCATACACAATTCCTTCTTGGGTCTTAAGTATTCCAACTTCTCTTATGGAGTCTGGT CTTTGGGTTGCAGTTACATATTATGCGATTGGTTATGATCCCAACTTTACAAGATTTTTGCTCCAGTTTGTGCTGTATTTCTTTCTGCACCAAGTGTCTA TAGCGCTATTCCGAGTTATGGGGTCACTGGGGCGCAACATGATCGTGGCCAACACCTTTGGTTCATTTGCTATGTTGGTTGTCATGGCCCTTGGAGGATA CATCATCTCAAGAGATCATATACCGCGCTGGTGGATATGGGGATTCTGGGTTTCTCCTCTAATGTATGCGCAAAATGCTGCTTCAGTCAACGAGTTCCTT GGCCACTCTTGGCATAAGAAATCTGGGAATAACAGCACCATTAACCTCGGGGAGAGTCTACTCAAAGCACGCAGTTTGTTTCCAGAAAGCTACTGGTACT GGATTGGTCTTGGAGCTTTGCTTGGATATGCAGTTCTTTTCAACTCCCTGTTCACATTGTTTCTCTCCTACCTCAATCCATTAGGGATGCAACAGGCTGT TGTCTCTAAAGAAGAGCTGCAAGAGAGAGAGAAGAGTAGGAAAAGTGGAGATGTCATTGTCGAACTAAGACATTACCTCGATAATTCAAACTCGTCAAAA GGAAAATATTTCAAGCAGAAAGGCATGGTCCTTCCATTTCAACCTCTTTCAATGTGTTTCAGCAACATCAATTACTTCGTCGATGTACCACTGGAATTGA AACAACAAGGGATAGCAGAAGATAGGTTGCAGCTATTGGTTAATGTTACTGGAGCATTTAGACCCAGTGTTCTCACCGCACTGGTCGGGGTCAGTGGTGC TGGAAAGACCACCCTCATGGATGTCCTAGCTGGCAGGAAAACAGGAGGTGTCATAGAAGGGACCATAAACTTATCTGGTTTCCCGAAAAAGCAGGAAACT TTCGCTCGAGTTTCTGGTTACTGTGAGCAAACTGATATCCATTCTCCTTGCATGACTGTTATTGAATCACTCCTTTTCTCTGCTTGGCTACGGTTATCAC CCGAAATTAAACTCGAGACTCAACAGGCATTTGTTGAAGAGGTGATGGAACTTGTTGAGCTTACTACATTGAGTGGTGCATTAATTGGACTCCCGGGAGT GCATGGTCTTTCAACAGAACAGAGGAAAAGGTTAACCATTGCTGTGGAGTTGGTAGCAAACCCATCTATAGTGTTCATGGATGAACCTACTTCTGGGTTG GATGCGAGGGCTGCAGCCATTGTAATGAGGACAGTTAGGAATATTGTAAACACTGGTCGAACAATCGTGTGTACCATCCACCAGCCAAGCATAGACATCT TCGAGTCCTTTGATGAGCTGTTGTTCATGAAGCGTGGAGGAGAAGTTATATATGCTGGACCACTTGGTACTAAATCTTGTGAACTGATCAAGTACTTTGA GGGAATTGAAGGAGTGAAGAAGATAAGGCCAGATTACAACCCTGCAGCCTGGATGCTTGAAGTTACTTGTTCAGCTGAAGAAACCCGCCTGGACATCGAC TTCGCAGAAATTTACAGGAAATCTCGACTGTACCAGCACAATAAAGAATTGGTTGAAAATCTAAGCAAACCACAGGCGGATACAAAAGAGTTGAACTTCC CAACCAAGTACTCCCAGTCATTTTTCAACCAGTTTCTGGCGTGCCTTTGGAAACAGAACATGTCCTACTGGAGAAACCCACAATACACTGCAGTTCGCTT CTTCTACACCATTGTCATCTCACTAATGCTCGGATCCATATGCTGGAAGTTCGGTTCCAAGAGGGAAACCGTTCAAGAGCTTTTCAACGCCATGGGATCC ATGTATGCAGCAGTTCTCTTCATTGGAATCACCAATGCTACCGCAGTTCAACCTGTGGTCTCCATCGAGAGGTTCGTCTCGTATCGCGAAAGAGCTGCCG GGATGTACTCAGCCTTGCCCTTTGCATTTGCTCAGGTTGTGATTGAGTTTCCTTACGTTTTTGGACAGACAATCATATACTGCTCGATATTCTACTCCAT GGCTGCATTTGAGTGGACCGCTCTCAAGTTCATCTGGTACACATTCTTCATGTACTTCAGCATGCTCTACTTCACTTTCTACGGCATGATGACGACCGCC CTGACTCCAAATCATAACGTTGCCGCCGTCATCTCCGCGCCCTTTTACATGCTCTGGAATCTCTTCAGCGGTTTCATGATCCCCCACAAGAGAATCCCAA TTTGGTGGAGATGGTACTACTGGGCAAACCCGATAGCTTGGACGTTATACGGACTGTTGACATCCCAGTACGGAGACGACGGGAGGGCCATGAAGCTGCC GGACGGGAATCAGATGGCGCCGGTGAAGATGGTGCTCCGGGAACTGCTTGGTTACAAACATGAATTCTTGGGAGTTGCAGGTGTAATGGTGGTTGGTTTC TGTTTGATGTTCGCCGTCATTTTCGCTTTCGCAATCAAAGCCTTCAATTTCCAGAGGAGATAA
AA sequence Show only first row Show all	>Lus10019453 pacid=23181576 polypeptide=Lus10019453 locus=Lus10019453.g ID=Lus10019453.BGIv1.0 annot-version=v1.0 MWSSAENVFGRSSSFRDAGEDEEALRWAALERLPTYARVRRGIFRNVVGDHREIDLSELVVEEQRLVIDRLVTAVDDDPELFFDRMRKRFDAVELEFPKI EVRFQNLKVESFVHVGSRALPTIPNFLFNMSEALLRTLGIYRGNRTKLTILDDLSGIIRPSRMTLLVGPPSSGKTTLLLALAGRLGNDLQMSGKITYNGH GLAEFVAPRTSAYVSQHDSHIAEMTVRETLELAGRCQGVGSKYDMLMELARREKMAGIKPDEDLDIFMKSLALGGQETNLVVEYIMKVFWLDVCADTLVG DEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSATTYQIIKYLRHSTHALDGTTMITLLQPAPETFELFDDVILLSEGQIVYQGPRESVLDFFS SVGFSCPERKNVADFLQEVTSKKDQQQYWSDPYRPYRYISPRKFVEAFRSFQTGKQLQRELEVPFDKRYNHPAALSTSPYGVRKSEVFRTCYNWQRLLIK RNSFIYVFKFIQLFIVALITMSVFFRTTMHHSSVYDGGLYLGSIYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTIPSWVLSIPTSLMESG LWVAVTYYAIGYDPNFTRFLLQFVLYFFLHQVSIALFRVMGSLGRNMIVANTFGSFAMLVVMALGGYIISRDHIPRWWIWGFWVSPLMYAQNAASVNEFL GHSWHKKSGNNSTINLGESLLKARSLFPESYWYWIGLGALLGYAVLFNSLFTLFLSYLNPLGMQQAVVSKEELQEREKSRKSGDVIVELRHYLDNSNSSK GKYFKQKGMVLPFQPLSMCFSNINYFVDVPLELKQQGIAEDRLQLLVNVTGAFRPSVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGTINLSGFPKKQET FARVSGYCEQTDIHSPCMTVIESLLFSAWLRLSPEIKLETQQAFVEEVMELVELTTLSGALIGLPGVHGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGEVIYAGPLGTKSCELIKYFEGIEGVKKIRPDYNPAAWMLEVTCSAEETRLDID FAEIYRKSRLYQHNKELVENLSKPQADTKELNFPTKYSQSFFNQFLACLWKQNMSYWRNPQYTAVRFFYTIVISLMLGSICWKFGSKRETVQELFNAMGS MYAAVLFIGITNATAVQPVVSIERFVSYRERAAGMYSALPFAFAQVVIEFPYVFGQTIIYCSIFYSMAAFEWTALKFIWYTFFMYFSMLYFTFYGMMTTA LTPNHNVAAVISAPFYMLWNLFSGFMIPHKRIPIWWRWYYWANPIAWTLYGLLTSQYGDDGRAMKLPDGNQMAPVKMVLRELLGYKHEFLGVAGVMVVGF CLMFAVIFAFAIKAFNFQRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Lus10019453 [exp]	0	1
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10000910 [exp]	1.4	0.9565
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10004571 [exp]	2.0	0.9450
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10042385 [exp]	2.4	0.9316
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Lus10021021 [exp]	2.8	0.9265
AT2G21960			unknown protein		Lus10006822 [exp]	3.9	0.8644
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033741 [exp]	4.2	0.8892
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10023505 [exp]	4.4	0.8572
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10011732 [exp]	4.5	0.8883
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10002501 [exp]	4.6	0.8989
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10030840 [exp]	5.7	0.8941

Compare expression of checked genes

Lus10019453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.